View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_67 (Length: 245)
Name: NF7504_high_67
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_67 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27980785 - 27980561
Alignment:
| Q |
1 |
atatgtattgccaatttagatgaaattgccttttctgtcaatctgacatacattattatatctttttatccattgacattcacctaggaaaaacaatggt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27980785 |
atatgtattgccaatttagatgaaattgccctttccgtcaatctgacatacattattatatctttttatccattgacattcacctaggaaaaacaatggt |
27980686 |
T |
|
| Q |
101 |
tgttagaaaaatagcttgtggggacgaaaccaaatgatgcatgagaaattgtagaaaaattgaatctgtacttatcaattatttaccaccaccaaacaat |
200 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27980685 |
tgttagaaaactagcttgtggggacgaaaccaaatggtgaatgagaaagtgtagaaaaattgaatct---cttatcaattatttaccaccaccaaacaat |
27980589 |
T |
|
| Q |
201 |
tatggatttcaattaataagcttagtat |
228 |
Q |
| |
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||||||||||||||||||||| |||||| |
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|
| T |
27980588 |
tatggatttcaattaataagcctagtat |
27980561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 28038087 - 28037863
Alignment:
| Q |
1 |
atatgtattgccaatttagatgaaattgccttttctgtcaatctgacatacattattatatctttttatccattgacattcacctaggaaaaacaatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28038087 |
atatgtattgccaatttagatgaaattgccctttccgtcaatctgacatacattattatatctttttatccattgacattcacctaggaaaaacaatggt |
28037988 |
T |
|
| Q |
101 |
tgttagaaaaatagcttgtggggacgaaaccaaatgatgcatgagaaattgtagaaaaattgaatctgtacttatcaattatttaccaccaccaaacaat |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28037987 |
tgttagaaaactagcttgtggggacgaaaccaaatggtgaatgagaaagtgtagaaaaattgaatct---cttatcaattatttaccaccaccaaacaat |
28037891 |
T |
|
| Q |
201 |
tatggatttcaattaataagcttagtat |
228 |
Q |
| |
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||||||||||||||||||||| |||||| |
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| T |
28037890 |
tatggatttcaattaataagcctagtat |
28037863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27969190 - 27968968
Alignment:
| Q |
1 |
atatgtattgccaatttagatgaaattgccttttctgtcaatctgacatacattattatatctttttatccattgacattcacctaggaaaaacaatggt |
100 |
Q |
| |
|
|||||||||| || |||||||| ||||||| |||| ||||||||||| |||| ||||||| |||||| ||||||||||||||| ||||||||||||||| |
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| T |
27969190 |
atatgtattgtcagtttagatggaattgccctttccgtcaatctgactgacat-attatatttttttacccattgacattcacccaggaaaaacaatggt |
27969092 |
T |
|
| Q |
101 |
tgttagaaaaatagcttgtggggacgaaaccaaatgatgcatgagaaattgtagaaaaattgaatctgtacttatcaattatttaccaccaccaaacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
27969091 |
tgttagaaaaatagcttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaatctg---ttatcaattatttaccacca-caaacaat |
27968996 |
T |
|
| Q |
201 |
tatggatttcaattaataagcttagtat |
228 |
Q |
| |
|
||||||||||||||||||||| |||||| |
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|
| T |
27968995 |
tatggatttcaattaataagcctagtat |
27968968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27887203 - 27886978
Alignment:
| Q |
1 |
atatgtattgccaatttagatgaaattgccttttctgtcaatctgacatacattattatatctttttatccattgacattcacctaggaaaaacaatggt |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| |||| ||||||||||| |||| |||||| |||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
27887203 |
atatgtattgtcaatttagatggaattgccatttccgtcaatctgactgacat-attataattttttacccattgacattcacccaggaaaaacaatggt |
27887105 |
T |
|
| Q |
101 |
tgttagaaaaatagcttgtggggacgaaaccaaatgatgcatgagaaattgtagaaaaattgaatctgtacttatcaattatttaccaccac--caaaca |
198 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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|
| T |
27887104 |
tgttaaaaaaataacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaatctg---ttatcaattatttaccaccaccacaaaca |
27887008 |
T |
|
| Q |
199 |
attatggatttcaattaataagcttagtat |
228 |
Q |
| |
|
||| ||||||||||||||||||| |||||| |
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|
| T |
27887007 |
attgtggatttcaattaataagcctagtat |
27886978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27945861 - 27945636
Alignment:
| Q |
1 |
atatgtattgccaatttagatgaaattgccttttctgtcaatctgacatacattattatatctttttatccattgacattcacctaggaaaaacaatggt |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| |||| ||||||||||| |||| |||||| |||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
27945861 |
atatgtattgtcaatttagatggaattgccatttccgtcaatctgactgacat-attataattttttacccattgacattcacccaggaaaaacaatggt |
27945763 |
T |
|
| Q |
101 |
tgttagaaaaatagcttgtggggacgaaaccaaatgatgcatgagaaattgtagaaaaattgaatctgtacttatcaattatttaccaccac--caaaca |
198 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
27945762 |
tgttaaaaaaataacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaatctg---ttatcaattatttaccaccaccacaaaca |
27945666 |
T |
|
| Q |
199 |
attatggatttcaattaataagcttagtat |
228 |
Q |
| |
|
||| ||||||||||||||||||| |||||| |
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| T |
27945665 |
attgtggatttcaattaataagcctagtat |
27945636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 28026104 - 28025879
Alignment:
| Q |
1 |
atatgtattgccaatttagatgaaattgccttttctgtcaatctgacatacattattatatctttttatccattgacattcacctaggaaaaacaatggt |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| |||| ||||||||||| |||| |||||| |||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
28026104 |
atatgtattgtcaatttagatggaattgccatttccgtcaatctgactgacat-attataattttttacccattgacattcacccaggaaaaacaatggt |
28026006 |
T |
|
| Q |
101 |
tgttagaaaaatagcttgtggggacgaaaccaaatgatgcatgagaaattgtagaaaaattgaatctgtacttatcaattatttaccaccac--caaaca |
198 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
28026005 |
tgttaaaaaaataacttgtggggacgaaaccaaatggtgcatgagaaattgtagaaaaattgaatctg---ttatcaattatttaccaccaccacaaaca |
28025909 |
T |
|
| Q |
199 |
attatggatttcaattaataagcttagtat |
228 |
Q |
| |
|
||| ||||||||||||||||||| |||||| |
|
|
| T |
28025908 |
attgtggatttcaattaataagcctagtat |
28025879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 54431382 - 54431274
Alignment:
| Q |
15 |
tttagatgaaattgccttttctgtcaatctgacatacattattatatctttttatccattgacattcacctaggaaaaacaatggttgttagaaaaatag |
114 |
Q |
| |
|
|||||||| ||||||| ||| | ||||||||||| ||| |||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||| | ||| |
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| T |
54431382 |
tttagatggaattgccctttttatcaatctgacagacagtattctat-tttttacccattgacattcacccaggaaaaacaatggttgttagaacactag |
54431284 |
T |
|
| Q |
115 |
cttgtgggga |
124 |
Q |
| |
|
|||||||||| |
|
|
| T |
54431283 |
cttgtgggga |
54431274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 54431261 - 54431221
Alignment:
| Q |
172 |
ttatcaattatttaccaccaccaaacaattatggatttcaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||||||| |
|
|
| T |
54431261 |
ttatcaattatttaccaccaccaaacattttttgatttcaa |
54431221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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