View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_69 (Length: 244)
Name: NF7504_high_69
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_69 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 1083698 - 1083521
Alignment:
| Q |
19 |
attaatgtcatcattttcaaatgaaaataaggcaattcaattggtaaagtgtgtatgtacctgttttgctctttttgattgtgcttggctctctctcaga |
118 |
Q |
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| T |
1083698 |
attaatgtcatcattttcaaatgaaaataaggcaattcaattggtaaagtgtgtatgtacctgttttgctctttttgattgtgcttggctctctctcaga |
1083599 |
T |
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| Q |
119 |
caaactactcctgcttctgtattccaagccacctcctgataaaggaaacatgtttcaattcatcagattaaaattcac |
196 |
Q |
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| T |
1083598 |
caaactactcctgcttctgtattccaagccacctcctgataaaggaaacatgtttcaattcatcagattaaaattcac |
1083521 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 46763254 - 46763196
Alignment:
| Q |
77 |
acctgttttgctctttttgattgtgcttggctctctctcagacaaactactcctgcttc |
135 |
Q |
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| T |
46763254 |
acctgttttgctctttttgattgtgcatggttctctctcagagaagctattcctacttc |
46763196 |
T |
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