View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_72 (Length: 238)
Name: NF7504_high_72
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_72 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 8044067 - 8043911
Alignment:
| Q |
70 |
gccctacctctagatacaaggatttcaccacccatataatgtcactgtctcattttataaattttgaatcataacaaaattataaaacctaactcatatt |
169 |
Q |
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| T |
8044067 |
gccctacctatagatacaaggatttcaccacctatataatgtcactgtctcattttataaattttgaatcataacaaaattataaaacctaactcatatt |
8043968 |
T |
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| Q |
170 |
atgcatctgcagtttaatttttctcatcctttttcatagtttc--tgtgttgtacat |
224 |
Q |
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| T |
8043967 |
atgtatctgtagtttaatttttctcatcctttttcatagtttctatgtgttgtacat |
8043911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8044100 - 8044057
Alignment:
| Q |
1 |
tggtatggatttaaatgactagaatttgaacttgccctacctat |
44 |
Q |
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| T |
8044100 |
tggtatggatttaaatgactagaatttgaacttgccctacctat |
8044057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 7969700 - 7969746
Alignment:
| Q |
77 |
ctctagatacaaggatttcaccacccatataatgtcactgtctcatt |
123 |
Q |
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| T |
7969700 |
ctctggatacaaggatttcaccacctatataatgtcatggtctcatt |
7969746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 41380199 - 41380259
Alignment:
| Q |
142 |
aacaaaattataaaacctaactcatattatgcatctgcagtttaatttttctcatccttttt |
203 |
Q |
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| T |
41380199 |
aacaaaattacaaaacctagctcatataatgtatctgtagtttaa-ttttctcatccatttt |
41380259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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