View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_73 (Length: 236)
Name: NF7504_high_73
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_73 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 27439490 - 27439271
Alignment:
| Q |
11 |
caccatttatatccatgctccaaatgtccagacctacgcgtgaaggggtgtgttaaagagcttacatgtttggctagctttataaccggccttaggtatt |
110 |
Q |
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| T |
27439490 |
caccatttatgtccatgctccaaatgtccagacctgcgcgtgaaggggtgtgttaaagagcttacatgtttggctagctttataaccggccttaggtatt |
27439391 |
T |
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| Q |
111 |
atgacatactagtatctgtaagacatatacatctgtcaccaatgttttcataattggttgtcatgcacattaattctgtattatttttctgccgtctcaa |
210 |
Q |
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| T |
27439390 |
atgacatactagtatctgtaagac--atacatctgtcagcaatgttttcataattggctgtcatgcac----attctgtattatttttctgccgtctcaa |
27439297 |
T |
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| Q |
211 |
caatatttatagatttttcttcaatc |
236 |
Q |
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| T |
27439296 |
caatatttataggtttttcttcaatc |
27439271 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 17423802 - 17423743
Alignment:
| Q |
11 |
caccatttatatccatgctccaaatgtccagacctacgcgtgaaggggtgtgttaaagag |
70 |
Q |
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| T |
17423802 |
caccatttacatccatgctccagatgtccagtcctaggcgtgagggggtgtgttaaagag |
17423743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 33640197 - 33640257
Alignment:
| Q |
11 |
caccatttatatccatgctccaaatgtccagacctacgcgtga-aggggtgtgttaaagag |
70 |
Q |
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| T |
33640197 |
caccatttatgtccatgctccagatgtccagtcctaggcgtgagaggggtgtgttaaagag |
33640257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 12930061 - 12930002
Alignment:
| Q |
11 |
caccatttatatccatgctccaaatgtccagacctacgcgtgaaggggtgtgttaaagag |
70 |
Q |
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|||||||| | ||||||||||| |||||||| |||| |||||| ||||||||||||||| |
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| T |
12930061 |
caccatttgtgtccatgctccagatgtccagtcctaggcgtgagagggtgtgttaaagag |
12930002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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