View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_high_76 (Length: 216)
Name: NF7504_high_76
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_76 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 2580483 - 2580296
Alignment:
| Q |
18 |
agtacaaaggatttaagatcaaaagctgatattgttgttgctaaagatggtagtggaaaatataaaactatatctgatgcacttaaacatgttcctaata |
117 |
Q |
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| T |
2580483 |
agtacaaaggatttaagatcaaaagctgatattgttgttgctaaagatggtagtggaaaatataaaactatatctgatgcacttaaacatgttcctaata |
2580384 |
T |
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| Q |
118 |
agagtaagaagaggactttgatctatgtgaagaaaggggtttactatgaaaatgtgagagttgaaaaaactaaatggaatgtgatgat |
205 |
Q |
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| T |
2580383 |
agagtaaaaagaggactttgatctatgtgaagaaagggatttactatgaaaatgtgagagttgaaaagactaaatggaatgtgatgat |
2580296 |
T |
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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 16604945 - 16605111
Alignment:
| Q |
39 |
aaagctgatattgttgttgctaaagatggtagtggaaaatataaaactatatctgatgcacttaaacatgttcctaataagagtaagaagaggactttga |
138 |
Q |
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| T |
16604945 |
aaagccgacattgttgtcgcgaaagacgggagtgggaaatacaaaacaatttcagctgcattgaaacatgtccctaataaaagtgacaagaggacagtga |
16605044 |
T |
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| Q |
139 |
tctatgtgaagaaaggggtttactatgaaaatgtgagagttgaaaaaactaaatggaatgtgatgat |
205 |
Q |
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| T |
16605045 |
tctatgtgaagaaagggatttattatgagaatgttagggtggaaaagaccaaatggaatgtcatgat |
16605111 |
T |
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