View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7504_high_77 (Length: 212)
Name: NF7504_high_77
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_high_77 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 43004602 - 43004433
Alignment:
| Q |
28 |
attaaagatgctgaaacattttgaaagtaataaaatctacatagttcttaaggtgtagctcatagttcaccctaggtattatatccgcatcgaattcaca |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43004602 |
attaaagatgctgaaacattttgaaagtaataaaatctacatagttcttaaggtgtagctcatagttcaccctaggtattatatccgcatcgaattcaca |
43004503 |
T |
|
| Q |
128 |
ttaatttccagctcaatgtatcacattgttattaggtgctgattagtttgaataattcaagggtgagttt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43004502 |
ttaatttccagctcaatgtatcacattgttattaggtgctgattagtttgaataattcaagggtgagttt |
43004433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 30674510 - 30674426
Alignment:
| Q |
106 |
ttatatccgcatcgaattcacattaatttccagctcaatgtatcacattgttattaggtgctgattagtttgaataattcaagggt |
191 |
Q |
| |
|
||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30674510 |
ttatagccgcattgaattc-cattaatttccagctcaatgtatcatattgttattaggtgctgatttgtttgaataattcaagggt |
30674426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University