View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7504_low_10 (Length: 577)

Name: NF7504_low_10
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7504_low_10
NF7504_low_10
[»] chr3 (11 HSPs)
chr3 (210-568)||(29821876-29822219)
chr3 (50-205)||(29822273-29822428)
chr3 (58-142)||(33149850-33149933)
chr3 (65-129)||(9769062-9769126)
chr3 (244-295)||(49333873-49333923)
chr3 (219-293)||(54653010-54653085)
chr3 (160-295)||(33149922-33150069)
chr3 (240-293)||(43102304-43102357)
chr3 (240-295)||(47807849-47807904)
chr3 (250-295)||(12992033-12992077)
chr3 (250-295)||(50259425-50259469)
[»] chr6 (4 HSPs)
chr6 (53-247)||(24546535-24546734)
chr6 (50-170)||(28930335-28930454)
chr6 (121-205)||(9754005-9754087)
chr6 (536-569)||(4030718-4030751)
[»] chr5 (3 HSPs)
chr5 (296-438)||(40880222-40880364)
chr5 (240-295)||(1663507-1663562)
chr5 (246-295)||(10084988-10085037)
[»] chr8 (4 HSPs)
chr8 (214-293)||(118777-118856)
chr8 (240-295)||(5777111-5777166)
chr8 (250-295)||(45436181-45436225)
chr8 (240-284)||(7487145-7487188)
[»] chr1 (2 HSPs)
chr1 (219-293)||(3978364-3978439)
chr1 (250-295)||(38961773-38961817)
[»] chr7 (3 HSPs)
chr7 (219-295)||(38407199-38407275)
chr7 (240-293)||(19279339-19279392)
chr7 (246-295)||(25154619-25154668)
[»] chr4 (1 HSPs)
chr4 (219-295)||(26791090-26791166)
[»] chr2 (1 HSPs)
chr2 (219-293)||(34039627-34039702)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 210 - 568
Target Start/End: Complemental strand, 29822219 - 29821876
Alignment:
210 aacaagaacatttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaacatgataaatgattgt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
29822219 aacaagaacatttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaatatgatagatgattgt 29822120  T
310 tagagaagtagtgattattccaattcgagaagggatgggtctcctaaagaagaaaggaaggccggaagtttttctgaatattttcttcatgattcgataa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
29822119 tagagaagtagtgattattccaattcgagaagggatgggtctcctaaaaaagaaaggaaggctggaagtttttctgaatattttcttcatgattccataa 29822020  T
410 acgtacaatcattcaaatacatattacatgataactaacttcctagaaaatagcagttactaaactacataattctaaactgcataattatagaaactga 509  Q
    | ||||||||||||||||||||||||||||  ||||||||||||||||||| | ||||||||               |||||||||||||||||||||||    
29822019 aagtacaatcattcaaatacatattacatggaaactaacttcctagaaaatggtagttacta---------------aactgcataattatagaaactga 29821935  T
510 ctattgcaattattttaaattataaataaactatttaacatatataattttgatgatgt 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29821934 ctattgcaattattttaaattataaataaactatttaacatatataattttgatgatgt 29821876  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 29822428 - 29822273
Alignment:
50 acataagaaaatctaagttatagtttattgttaatcaaatttttcaaattaaaataggaatcgaatttcaacaacaacaacaatttggtttcttctttct 149  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||    
29822428 acataaaaaaatctaagctatagtttattgttaatcaaatttttcaaactaaaatgggaatcaaatttcaacaaaaacaacaatttggtttcttctttct 29822329  T
150 ttagaggaaaaatttgttttctacttgttgcaaacaacaatgatgttggtcctcat 205  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
29822328 ttagaggaataatttgttttctacttgttgcaaacaacaatgatgttggtcctcat 29822273  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 33149850 - 33149933
Alignment:
58 aaatctaagttatagtttattgttaatcaaatttttcaaattaaaataggaatcgaatttcaacaacaacaacaatttggtttct 142  Q
    ||||||||| ||||||||||||| ||||||||||| |||| |||||| |||||| |||||||||| |||||||||||||||||||    
33149850 aaatctaagctatagtttattgtcaatcaaatttt-caaactaaaatgggaatcaaatttcaacagcaacaacaatttggtttct 33149933  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 9769126 - 9769062
Alignment:
65 agttatagtttattgttaatcaaatttttcaaattaaaataggaatcgaatttcaacaacaacaa 129  Q
    ||||||| ||||||||||||||||||||||||| | |||  ||||||||||||||||||||||||    
9769126 agttataatttattgttaatcaaatttttcaaactcaaaatggaatcgaatttcaacaacaacaa 9769062  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 49333923 - 49333873
Alignment:
244 atcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||    
49333923 atcaaccttttcaacaaccacaaacaccc-aatctcaatttcaacaacaaca 49333873  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 54653010 - 54653085
Alignment:
219 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 293  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| | ||| |||||||||||||||||    
54653010 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaacatctcaaactcaatttcaacaacaa 54653085  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 33149922 - 33150069
Alignment:
160 aatttgttttctacttgttgcaaacaacaatgatgttggtcctcat-----------caacaacaagaaca-tttcttcattacaatatcagcaacatca 247  Q
    |||||| ||||||||||||||||| |  ||||||||||||||||||           ||||||||| |||| ||| || || |||||| || || || ||    
33149922 aatttggtttctacttgttgcaaatagtaatgatgttggtcctcatatagccatcaacaacaacaacaacaattttttaatcacaataacaacagcagca 33150021  T
248 accttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    |||||| ||| ||||| ||||||||||||  |||||||||||||||||    
33150022 acctttgcaagaaccataaacaccccaatggcaatttcaacaacaaca 33150069  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 43102304 - 43102357
Alignment:
240 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 293  Q
    ||||| |||||||||||| |||||||||||  |||||| |||||||||||||||    
43102304 caacaacaaccttttcaacaaccacaaacattccaatcccaatttcaacaacaa 43102357  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 47807904 - 47807849
Alignment:
240 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    ||||| |||||||||| | ||||||||||| |  ||||||||||||||||||||||    
47807904 caacaacaaccttttcgacaaccacaaacatcttaatctcaatttcaacaacaaca 47807849  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 12992077 - 12992033
Alignment:
250 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
12992077 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 12992033  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 50259425 - 50259469
Alignment:
250 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
50259425 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 50259469  T

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Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 53 - 247
Target Start/End: Complemental strand, 24546734 - 24546535
Alignment:
53 taagaaaatctaagttatagtttattgttaatcaaatttttcaaattaaaataggaatcgaatttcaacaacaacaacaatttggtttcttctttcttta 152  Q
    |||||||||||||| ||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||   |||||||||||||||| |||    
24546734 taagaaaatctaagctatggtttattgttaatcaaatttttcaaactaaaatgggaattgaatttcaacaacaacaa---tttggtttcttctttcatta 24546638  T
153 gaggaaaaatttgttttctacttgttgcaaacaacaatgatgttggtcct--------catcaacaacaagaacatttcttcattacaatatcagcaaca 244  Q
    |||||| |||||||||||||||||||||||||| ||||| |||| |||||        |||||||||||||||||||||||||| |||||| ||||||||    
24546637 gaggaacaatttgttttctacttgttgcaaacatcaatggtgtttgtcctcatatggccatcaacaacaagaacatttcttcatcacaataccagcaaca 24546538  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 28930454 - 28930335
Alignment:
50 acataagaaaatctaagttatagtttattgttaatcaaatttttcaaattaaaataggaatcgaatttcaacaacaacaacaatttggtttcttctttct 149  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||||| ||||||||||||| || ||| |    
28930454 acataagacaatctaacttatagtttatcgttaatcaaatttttcaaactaaaatgggaatcaaatttcaacaacaataacaatttggttt-tttttttt 28930356  T
150 ttagaggaaaaatttgttttc 170  Q
    ||| ||||| |||||| ||||    
28930355 ttaaaggaacaatttggtttc 28930335  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 9754087 - 9754005
Alignment:
121 caacaacaacaatttggtttcttctttctttagaggaaaaatttgttttctacttgttgcaaacaacaatgatgttggtcctcat 205  Q
    |||||||||||||||||||||| |||| ||||||   | |||||| ||||||| |||||||| ||  ||||||||||||||||||    
9754087 caacaacaacaatttggtttctactttttttagac--acaatttggtttctacatgttgcaaccagtaatgatgttggtcctcat 9754005  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 569
Target Start/End: Complemental strand, 4030751 - 4030718
Alignment:
536 taaactatttaacatatataattttgatgatgtc 569  Q
    ||||||||||||||| ||||||||||||||||||    
4030751 taaactatttaacatgtataattttgatgatgtc 4030718  T

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Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 296 - 438
Target Start/End: Original strand, 40880222 - 40880364
Alignment:
296 tgataaatgattgttagagaagtagtgattattccaattcgagaagggatgggtctcctaaagaagaaaggaaggccggaagtttttctgaatattttct 395  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||    
40880222 tgatagatgattgttaaagaagtagtgattatcccaattcgagaagggatgagtctcctaaagaagaaaggaaggctgtaagtttttatgaatattttct 40880321  T
396 tcatgattcgataaacgtacaatcattcaaatacatattacat 438  Q
    | ||||||| | ||||||||||||||||||||||| |||||||    
40880322 taatgattcaacaaacgtacaatcattcaaatacacattacat 40880364  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 1663507 - 1663562
Alignment:
240 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    ||||| |||| ||||||| ||||||||||| | |||||||||||||||||||||||    
1663507 caacaacaactttttcaacaaccacaaacatctcaatctcaatttcaacaacaaca 1663562  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 10084988 - 10085037
Alignment:
246 caaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    |||||||||||| |||||| ||||  ||||||||||||||||||||||||    
10084988 caaccttttcaacaaccacgaacattccaatctcaatttcaacaacaaca 10085037  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 118856 - 118777
Alignment:
214 agaacatttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 293  Q
    |||| |||||||||| ||||| | || ||||||||||||||||| || ||| ||||||||||||||||||||||| |||||    
118856 agaaaatttcttcatcacaattagcaacaacatcaaccttttcataa-ccataaacaccccaatctcaatttcaataacaa 118777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 5777166 - 5777111
Alignment:
240 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    ||||| |||||||||||| || | |||||| ||||||||||||| |||||||||||    
5777166 caacaacaaccttttcaacaatctcaaacaacccaatctcaattccaacaacaaca 5777111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 45436225 - 45436181
Alignment:
250 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
45436225 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 45436181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 7487188 - 7487145
Alignment:
240 caacatcaaccttttcaaaaaccacaaacaccccaatctcaattt 284  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||    
7487188 caacatcaaccttttcataa-ccataaacaccccaatctcaattt 7487145  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 3978364 - 3978439
Alignment:
219 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 293  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| | ||| |||||||||||||||||    
3978364 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaacatctcaaactcaatttcaacaacaa 3978439  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 38961817 - 38961773
Alignment:
250 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
38961817 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 38961773  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 38407275 - 38407199
Alignment:
219 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    |||||||||| ||||| | || ||||||||||||||||| || ||| || ||||| ||||||||||||||||||||||    
38407275 atttcttcatcacaattagcaacaacatcaaccttttcataa-ccataatcaccctaatctcaatttcaacaacaaca 38407199  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 19279392 - 19279339
Alignment:
240 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 293  Q
    ||||| |||||||||||| ||||||||||| | ||| |||||||| ||||||||    
19279392 caacaacaaccttttcaacaaccacaaacatctcaaactcaattttaacaacaa 19279339  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 25154668 - 25154619
Alignment:
246 caaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    |||| ||||||| |||||||||||| |||||||||| | |||||||||||    
25154668 caactttttcaacaaccacaaacactccaatctcaaatccaacaacaaca 25154619  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 26791166 - 26791090
Alignment:
219 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 295  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| ||| ||||||||||||||| |||||    
26791166 atttcttcattaccatgaacaacaacaacaaccttttcaacaaccacaaacatccc-atctcaatttcaacagcaaca 26791090  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 34039627 - 34039702
Alignment:
219 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 293  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||| |  |||||| |||||||||||||||    
34039627 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaatattccaatcccaatttcaacaacaa 34039702  T

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