View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_12 (Length: 519)
Name: NF7504_low_12
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 49438951 - 49438452
Alignment:
| Q |
1 |
tattacgaggaaataacattgaatactcaatatgcccttgatagctttaacgagtttgtgcactccattctgctcaagctagattccatcaagagttttc |
100 |
Q |
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| T |
49438951 |
tattgcgaggaaataacattgaatactcaatatgcccttgatagctttaacgagtttgtgtactccattctgctcaagctagattccatcaagagttttc |
49438852 |
T |
|
| Q |
101 |
acctcaaggttggatatggtagttcttctcttggatcccgtggctttcccagtgtggtcaaatgggttgaccatgttgtacaccatggtgttgagagcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49438851 |
acctcaaggttggatatggtagttcttctcttggatcccgtggctttcccagtgtggtcaaatgggttgatcatgttgtacaccatggtgttgagagcct |
49438752 |
T |
|
| Q |
201 |
tcgtctctttcctttcacttacagtgatatgaaattgcccgttagcattttgaactgcaaaacccttgttgtgctcgacttgttttcatttaatgcgaag |
300 |
Q |
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| T |
49438751 |
tcgtctctttcctttcacttacagtgatatgaaattgcccgttagcattttgaactgcaaaacccttgttgtgctcgacttgttttcatttaatgcgaag |
49438652 |
T |
|
| Q |
301 |
gatttttcttctgttagactcccctccctcaaaatccttcgcttagaactttgttcatttctaaatgatcgagatttagtgttgcttctggctggatgtc |
400 |
Q |
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| T |
49438651 |
gatttttcttctgttagactcccctccctcaaaatccttcgcttagaactttgttcatttctaaatgatcgagatttagtgttgcttctggctggatgtc |
49438552 |
T |
|
| Q |
401 |
caattcttgaagatttgcatacagaacatttaaagttctcgcttaaggactcttttacccatcaagagggtgaaaccttaagcttaagcaagttgactaa |
500 |
Q |
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| T |
49438551 |
caattcttgaagatttgcatacagaacatttaaagttctcgcttaaggactcttttacccatcaagagggtgaaaccttaagcttaagcaagttgactaa |
49438452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 44 - 423
Target Start/End: Complemental strand, 49435065 - 49434686
Alignment:
| Q |
44 |
gctttaacgagtttgtgcactccattctgctcaagctagattccatcaagagttttcacctcaaggttggatatggtagttcttctcttggatcccgtgg |
143 |
Q |
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|||| |||||||||||| |||| || || ||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||| || || ||| |
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| T |
49435065 |
gcttcaacgagtttgtgtactctgttttgttcaagctagattccatcaagagtttctggctcaaggttggatataatggttctgatcttgcataccttgg |
49434966 |
T |
|
| Q |
144 |
ctttcccagtgtggtcaaatgggttgaccatgttgtacaccatggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattgcccgtt |
243 |
Q |
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| T |
49434965 |
ctttcctagcgtagttaaatggctcaaccatgttgtaaaacgcggtgttgagagaattcttctcactcttttctctggcgttgatatgaaattgcccgtt |
49434866 |
T |
|
| Q |
244 |
agcattttgaactgcaaaacccttgttgtgctcgacttgttttcatttaatgcgaaggatttttcttctgttagactcccctccctcaaaatccttcgct |
343 |
Q |
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| T |
49434865 |
agcattttgaactgcaaaacccttgtggagctccacttgttttcatttaatgtgaaaggtttttcctctgttagacttccctccctcaaaatcctttatt |
49434766 |
T |
|
| Q |
344 |
tagaactttgttcatttctaaatgatcgagatttagtgttgcttctggctggatgtccaattcttgaagatttgcataca |
423 |
Q |
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| T |
49434765 |
tagaactttgttcgtttctaaatgctagagatttagtattgcttttggctggatgtccaattctagaagatttacataca |
49434686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 416
Target Start/End: Complemental strand, 17637780 - 17637721
Alignment:
| Q |
357 |
atttctaaatgatcgagatttagtgttgcttctggctggatgtccaattcttgaagattt |
416 |
Q |
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||||||||||| |||||||||| |||||||| ||| |||||||| | ||||||||||||| |
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| T |
17637780 |
atttctaaatgctcgagatttactgttgcttttggttggatgtcaatttcttgaagattt |
17637721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 367
Target Start/End: Original strand, 49415223 - 49415269
Alignment:
| Q |
321 |
cccctccctcaaaatccttcgcttagaactttgttcatttctaaatg |
367 |
Q |
| |
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||||||||||||||||||||| ||||||| |||| ||||||||||| |
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| T |
49415223 |
cccctccctcaaaatccttcgtttagaacattgtatatttctaaatg |
49415269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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