View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7504_low_14 (Length: 483)
Name: NF7504_low_14
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_14 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 27439279 - 27438794
Alignment:
| Q |
1 |
tcttcaatcaaaatatgtaaaattacactttcttttcggtattatctatgatgtttaacagcgtaatggacataagtcgtatagcatgttatggtatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27439279 |
tcttcaatcaaaatatgtaaaattacactttcttttcgatattatctatgatgtttaacagcgtaatggacataagtcgtatagcatgttatggtatgca |
27439180 |
T |
|
| Q |
101 |
ctatgcaatcaaaaatctcacattggattggtaagatctaaaaaagtttataggtgagagacatttttca----acatttagatcacataagaaattgta |
196 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
27439179 |
ctatacagtcaaaaatctcacattggattggtaagatctaaaaaagtttataggtgagagatatttttcaacttacatttagattacataagaaattgta |
27439080 |
T |
|
| Q |
197 |
agataacatttgagtctatctaagatctgtcgatgtccaaactatgagcatggtagggtgtgttattattgcatgaaatatgatctaaaaatgggtttac |
296 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
27439079 |
agataacatttgagtctatctaagatttgtcgatgtccaaactatgagcatggtagggtgtgttattattggatgaaatatgatctaaaaacgggtttac |
27438980 |
T |
|
| Q |
297 |
aggtggtggagaactcttactttacaagtcatggtttaataaagactgagttaagtatagctcaaattctaagatgctattagagtttatattttatatc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27438979 |
aggtggtggagaactcttactttacaagtcatgg-ttagtaaagactgagctaagtatagctcaaattctaagatgatattagagtttatattttatatc |
27438881 |
T |
|
| Q |
397 |
atccgctactaaatcattgttattgaacgactttagttacgttcaaaaacttcgatcgagagcactactgtgtaataagagttccat |
483 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27438880 |
atctgctactaaatcattgctattgaacgactttcgttacgttcaaaaacttcgatcgagagcactactgtgtaataagagttccat |
27438794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University