View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_16 (Length: 464)
Name: NF7504_low_16
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Complemental strand, 31360214 - 31359781
Alignment:
| Q |
15 |
tattcaattaaatttcttgcagcagtgcctatattccgtaatggtctaatggattgatttcgcaaattaaaatcgacctaggtggctagtaccagaacca |
114 |
Q |
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| T |
31360214 |
tattcaattaaatttcttgcagcagtgcctatattccgtaatggtctaatggattgatttcgcaaattaaaatcgacctaggtggctagtaccagaacca |
31360115 |
T |
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| Q |
115 |
tttttgcatgtgctactgacacgaaattgaatctgaaatattgacaaaaatgtatccatttggtggatggtataatgaaaggagggggaaatttattatt |
214 |
Q |
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| T |
31360114 |
tttttgcatgtgctactgacacgaaattgaatctgaaatattgacaaaaatgtatccatttggtggatggtataatgaaaggagggggaaatttattatt |
31360015 |
T |
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| Q |
215 |
gtgtgtacacttttggtatccaaggaattgaatttgaactttgtcattgagctcaaagcaagatattgtaatcattgacaatccgataaaaaatatttag |
314 |
Q |
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| T |
31360014 |
gtgtgtacacttttggtatccaaggaattgaatttgaactttgtcattgagctcaaagcaagatattgtaatcattgacaatccgataaaaaatatttag |
31359915 |
T |
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| Q |
315 |
ttataaaatgttgagattagtaatttaaactaagattgtttcgtgtaagtagagttaactagtcagttgtgtttgcaaccaatttatatgtgttttctat |
414 |
Q |
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| T |
31359914 |
ttataaaatgttgagattagtaatttaaactaagattgtttcgtgtaagtagagttaactagtcagttgtgtttgcaaccaatttatatgtgttttctat |
31359815 |
T |
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| Q |
415 |
tgttattaggtagttacagaaacagattacttgt |
448 |
Q |
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| T |
31359814 |
tgttattaggtagttacagaaagagattacttgt |
31359781 |
T |
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