View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_21 (Length: 437)
Name: NF7504_low_21
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Complemental strand, 27312764 - 27312358
Alignment:
| Q |
13 |
catcatctgctttcgaactttatcgggtaatctcaatgtaaacctctcacaatcctcacctggttgcaccaacacacctgttgagtttgaccgtgataac |
112 |
Q |
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| T |
27312764 |
catcatctgctttcgaactttatcgggtaacctcagtgtaaacctctcacaatcctcacctggttgcaccaacacacctgttgagtttgaccgtgataac |
27312665 |
T |
|
| Q |
113 |
aagagaatagataagaatcctgttgatcttgaccgtgttggtgcagaatatgttttagacctatgaagtacatctaccttaggtgaattttccacttcca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27312664 |
aagagaatagataagaatcctgttgatcttgaccgtgttggtgcagaatatgttttagacctacgaagtacatctaccttaggtgaattttccacttcca |
27312565 |
T |
|
| Q |
213 |
cgttggctttcttttgttcctcttcaacaatatgttctacttcttcatcatttgaaatttgtatactcaattcttgacgattatcttctccttctggtat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27312564 |
cgttggctttcttttgttcctcttcaacaatatgttctacttcttcatcatttgaaatttgtatactcaattcttgacgattatcttctccttctggtat |
27312465 |
T |
|
| Q |
313 |
ctgattcgatatcattgtaggctcggtggtgtcaatatcgggtcttggagcaaggttagcacgacaaactgggcaagtatcatgagagacaagccaaata |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27312464 |
ctgattcgatatcattgtaggctcggtggtgtcaatatcgggtcttggagcaaggttagcacgacaaactgggcaagtatcatgagagacaagccaaata |
27312365 |
T |
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| Q |
413 |
tcgatgc |
419 |
Q |
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||||||| |
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| T |
27312364 |
tcgatgc |
27312358 |
T |
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