View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7504_low_27 (Length: 407)

Name: NF7504_low_27
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7504_low_27
NF7504_low_27
[»] chr4 (4 HSPs)
chr4 (2-269)||(54559428-54559702)
chr4 (352-391)||(54559785-54559824)
chr4 (180-222)||(44257756-44257798)
chr4 (180-221)||(21392573-21392614)
[»] chr8 (1 HSPs)
chr8 (175-222)||(35153013-35153060)
[»] chr5 (1 HSPs)
chr5 (180-222)||(14011320-14011362)
[»] chr3 (1 HSPs)
chr3 (180-222)||(45657796-45657838)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 269
Target Start/End: Original strand, 54559428 - 54559702
Alignment:
Q  2 aaaatctgaattaagattttagtcagattttaaatagtctaatgaattatagttgaattaaataacaattgaacatgacagaattttttcttcttctcaa 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54559428 aaaatctgaattaagattttagtcggattttaaatagtctaatgaattatagttgaattaaataacaattgaatatgacagaattttttcttcttctcaa 54559527  T
Q  102 gttcacta------------agattcaggaaggtagtgttagaatcagtcaaagacacaccagaataattacttgcatttattcattgaaaaatgatatt 189  Q
    ||||||||            | |||||||||||||||||||||||||||||||||||||||||||||| |      ||||||||||||||||||||||||    
T  54559528 gttcactactccagaataaaaaattcaggaaggtagtgttagaatcagtcaaagacacaccagaataaatt-----atttattcattgaaaaatgatatt 54559622  T
Q  190 taagcaatcattttgtaacaatttttgtgacaaaacatttattcatcccaaacagaattacattcagtggaatgaatcca 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54559623 taagcaatcattttgtaacaatttttgtgacaaaacatttattcatcccaaacagaattacattcagtggaatgaatcca 54559702  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 391
Target Start/End: Original strand, 54559785 - 54559824
Alignment:
Q  352 ttgaatgtgaatgaaagcagtcgtgcgaatagcaatagtt 391  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  54559785 ttgaatgtgaatgaaagcagtcgtgcgaatagcaatagtt 54559824  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 44257798 - 44257756
Alignment:
Q  180 aaatgatatttaagcaatcattttgtaacaatttttgtgacaa 222  Q
    |||||||||||  ||||||||||| ||||||||||||||||||    
T  44257798 aaatgatatttgtgcaatcattttctaacaatttttgtgacaa 44257756  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 21392573 - 21392614
Alignment:
Q  180 aaatgatatttaagcaatcattttgtaacaatttttgtgaca 221  Q
    ||||||||||| | |||||||||||||| |||||||||||||    
T  21392573 aaatgatatttgaacaatcattttgtaataatttttgtgaca 21392614  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 35153013 - 35153060
Alignment:
Q  175 ttgaaaaatgatatttaagcaatcattttgtaacaatttttgtgacaa 222  Q
    |||| ||||||||||| | |||||||||||||||||||||||| ||||    
T  35153013 ttgagaaatgatatttgaacaatcattttgtaacaatttttgttacaa 35153060  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 14011320 - 14011362
Alignment:
Q  180 aaatgatatttaagcaatcattttgtaacaatttttgtgacaa 222  Q
    ||||||||||| | ||||||||||||||||| |||||||||||    
T  14011320 aaatgatatttgaacaatcattttgtaacaacttttgtgacaa 14011362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 45657838 - 45657796
Alignment:
Q  180 aaatgatatttaagcaatcattttgtaacaatttttgtgacaa 222  Q
    ||||||||||||  |||||||||| ||||||||||||||||||    
T  45657838 aaatgatatttatacaatcattttctaacaatttttgtgacaa 45657796  T

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