View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7504_low_3 (Length: 717)

Name: NF7504_low_3
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7504_low_3
NF7504_low_3
[»] chr1 (1 HSPs)
chr1 (1-706)||(8293547-8294257)


Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 1 - 706
Target Start/End: Complemental strand, 8294257 - 8293547
Alignment:
Q  1 atcaattccaacacatcaacaggtggatttatcaatgtgttgttttttgccatctcatccgttttcatttcaacgagccactgcagaatcattgcaagtt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8294257 atcaattccaacacatcaacaggtagatttatcaatgtgttgtttttttccatctcatccgttttcatttcaacgagccactgcagaatcattgcaagtt 8294158  T
Q  101 gcaaacactagtgtattaaaataagtataagtttcttttgattatgatgtaaaaggatcactaaagtatcttgacatcactatatnnnnnnnn---ggaa 197  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||           ||||    
T  8294157 gcaaacattagtgtattaaaataagtataagtttcttttgattttgatgtaaaaggatcactaaagtgtcttgacatcactatataaaaaaaaaaaggaa 8294058  T
Q  198 ttccaactagtatacttgtatttannnnnnn-cactgaaccactgcagaatacttgtcccttgcaaatattagtaataaaaatactgctcagaagactaa 296  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8294057 ttccaactagtatacttgtatttattttttttcactgaaccactgcagaatacttgtcccttgcaaatattagtaataaaaatactgctcagaagactat 8293958  T
Q  297 gacggagaaagctcgaaaaataacatcatcactgatcagagctccaatatgatgtggaagggatattcatattacacacataaaactaatagcagtaact 396  Q
    |||| ||||||  || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8293957 gacgaagaaagtgcggaaaataacatcgtcactgatcagagctccaatatgatgtggaagggatattcatattacacacataaaactaatagcagtaact 8293858  T
Q  397 cataactatataaaaacaacagaaacgtgtacattgcagaaactgataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatac 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8293857 cataactatataaaaacaacagaaacgtgtacattgcagaaactgataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatac 8293758  T
Q  497 taatattctacatttgttattnnnnnnntagcacctaaaccagagatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacg 596  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8293757 taatattctacatttgttattaaaaaaatagcacctaaaccagagatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacg 8293658  T
Q  597 cagcaacaaaatatctggaatcagagaaattaacacggaagagaagag-aaaaataaatggacacataagatttaccagtttcaatcaattgtaagcagc 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8293657 cagcaacaaaatatctggaatcagagaaattaacacggaagagaagagaaaaaataaatggacacataagatttaccagtttcagtcaattgtaagcagc 8293558  T
Q  696 tccacaggttc 706  Q
    |||||||||||    
T  8293557 tccacaggttc 8293547  T

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