View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_32 (Length: 382)
Name: NF7504_low_32
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 41024863 - 41025223
Alignment:
| Q |
1 |
gttgcttgtacttctcttttagcacatcaatctgagacttggccttctctaaaagctctatccaaatgtcaaaaatcacattaacatcgattaatnnnnn |
100 |
Q |
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| T |
41024863 |
gttgcttgtacttctcttttagcacatcaatctgagacttggccttctctaaaagctctatccaaatgtcaaaaatcacattaacatcaaaaaa------ |
41024956 |
T |
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| Q |
101 |
nncaaacatgaaaacatatacttatggcccgtttgttatagattaaaaaagatgtgattttcactttatatttctaaaaatgatttttacgaaaacttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41024957 |
--caaacatgaaaacatatacttatggcccgtttgttatagattaaaaaagatgtgattttcactttatatttctaaaaatgatttttacgaaaacttgt |
41025054 |
T |
|
| Q |
201 |
taaaaaacacttgaagctatttcaaactacttctttataaattaaaagagtaattttgattcattgttggaaatttaacctaacaaaatcacnnnnnnnn |
300 |
Q |
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| T |
41025055 |
taaaaaacacttgaagctatttcaaactacttctttataaattaaaagagtaattttgattcattgttggaaatttaacctaacaagatcactttttttt |
41025154 |
T |
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| Q |
301 |
gcaaaaaga------tagaaaatgacttagcttctcattttaagcatttttccccttgaatcaataagc |
363 |
Q |
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| T |
41025155 |
gcaaaaagatatttctagaaaatgacttagcttctcattttaagcatttttccccttgaatcaataagc |
41025223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 30389849 - 30389728
Alignment:
| Q |
132 |
tttgttatagattaaaaaagatgtgattttcactttatatttctaaaaatgatttttacgaaaacttgttaaaaaacacttgaagctatttcaaactact |
231 |
Q |
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| T |
30389849 |
tttgttatagattaaaaaaa--gtgatttttactttatatttttaaatctgatttttatgaaaactt----aaaaatagtagaagctattttgaactcat |
30389756 |
T |
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| Q |
232 |
tctttataaattaaaagagtaattttga |
259 |
Q |
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| T |
30389755 |
ttgttataaattaaaagagtaattttga |
30389728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 36746543 - 36746413
Alignment:
| Q |
126 |
ggcccgtttgttatagattaaaaaagatgtgattttcacttt-atatttctaaaaatgatttttacgaaaacttgttaaaaaacacttgaagctatttca |
224 |
Q |
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||||| |||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||| | ||||||||| ||||||| | ||||||||||| |
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| T |
36746543 |
ggcccatttgttatagattaaaaaag---tgatttttacttttatattgttaaaaatgatttt-atgaaaacttgctaaaaaatggtggaagctatttcg |
36746448 |
T |
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| Q |
225 |
aactacttctttataaattaaaagagtaattttga |
259 |
Q |
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|||| || ||||||||||||||| ||| ||||| |
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| T |
36746447 |
aacttatttgttataaattaaaagaataactttga |
36746413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 2536919 - 2536994
Alignment:
| Q |
131 |
gtttgttatagattaaaaaagatgtgattttcactttatatttctaaaaatgatttttacgaaaacttgttaaaaaa |
207 |
Q |
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||||||||||| || ||||| | |||| ||| ||||||||||||| |||||||||||| |||||||| || ||||| |
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| T |
2536919 |
gtttgttatagttttaaaaaaa-gtgacttttgctttatatttctagaaatgatttttatgaaaacttcttcaaaaa |
2536994 |
T |
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