View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7504_low_33 (Length: 379)
Name: NF7504_low_33
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 369
Target Start/End: Original strand, 15029601 - 15029973
Alignment:
| Q |
10 |
aagaatatatatagaaagatttgtcaaaatgtaatcatatataacagaggaaaattcttttatattataacatgatgatttgaaataaataattaacaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15029601 |
aagaatatatatagaaagatttgtcaaaatgtaatcatatataacagaggaaaattcttttatattataacatgatgatttgaaataaataattaacaat |
15029700 |
T |
|
| Q |
110 |
ttactccatcttagtgaactttgatgagatgaatttatacatcataat---------------tctagtgcttatcataaagattacagtgaagtggtgc |
194 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15029701 |
ttactccatcttagtgaattttgatgagatgaatttatacatcataatcaatagagataaaactctagtgcttatcataaagattacagtgaagtggtgc |
15029800 |
T |
|
| Q |
195 |
agctagtatctcacataaaaccatatcaacatgnnnnnnngcatcccttgatcttaaaaacaacacctataactcattctttcaaggtaaagagtttaac |
294 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15029801 |
agctagtatctcacataa--ccatatcaacatgtttttttgcatcccttgatcttaaaaacaacacctataactcattctttcaaggtaaagagtttaag |
15029898 |
T |
|
| Q |
295 |
agttggtatagattctacacttgaacatgtagaatgtagaaatcacataaaattacactaacggccctaacagag |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15029899 |
agttggtatagattctacacttgaacatgtagaatgtagaaatcacataaaattacactaacggccctaacagag |
15029973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University