View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7504_low_39 (Length: 340)

Name: NF7504_low_39
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7504_low_39
NF7504_low_39
[»] chr3 (7 HSPs)
chr3 (120-325)||(20584985-20585190)
chr3 (10-82)||(325621-325693)
chr3 (10-110)||(14237139-14237239)
chr3 (10-67)||(21039811-21039868)
chr3 (10-67)||(22504184-22504241)
chr3 (10-67)||(5274011-5274068)
chr3 (10-67)||(24729178-24729235)
[»] chr8 (2 HSPs)
chr8 (124-254)||(22534122-22534252)
chr8 (10-82)||(10897090-10897162)
[»] scaffold0562 (1 HSPs)
scaffold0562 (126-254)||(10452-10580)
[»] chr4 (4 HSPs)
chr4 (10-114)||(23211-23315)
chr4 (126-254)||(3879618-3879746)
chr4 (10-76)||(13913905-13913971)
chr4 (158-243)||(55541495-55541577)
[»] chr2 (1 HSPs)
chr2 (10-110)||(45050376-45050476)
[»] scaffold0191 (1 HSPs)
scaffold0191 (10-82)||(16071-16143)
[»] scaffold0018 (1 HSPs)
scaffold0018 (10-67)||(165582-165639)
[»] chr6 (2 HSPs)
chr6 (10-67)||(18892372-18892429)
chr6 (10-48)||(22820832-22820870)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 120 - 325
Target Start/End: Original strand, 20584985 - 20585190
Alignment:
Q  120 cgtgggatttgtggcgacatttgttgcggttagggttggaagggaaggatgggatgtgggtggagttgttgaagaagaggcggaggccatggtgaagagg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20584985 cgtgggatttgtggcgacatttgttgcggttagggttggaagggaaggatgggatgtgggtggagttgttgaagaagaggcggaagccatggtgaagagg 20585084  T
Q  220 aggaaagtgacgacagaggaggagtggtggaggtgtcggttgttccgttgttgggggagacacaatccagcaattgttgtgatgttgttgttcatggggt 319  Q
    |||| ||||||||  |||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||    
T  20585085 aggagagtgacgatggaggaggagtggtggaggtgtcggttgttgtgttgttgggggagacagaattcagcaactgttgtgttgttgttgttcatggggt 20585184  T
Q  320 ttggat 325  Q
    ||||||    
T  20585185 ttggat 20585190  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 325621 - 325693
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattgagggtatttctgtgat 82  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  325621 aattaactttgacattttaatgtcatttaatcccaactcatttttatatattgattgagggtatttctgtgat 325693  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 14237139 - 14237239
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattgagggtatttctgtgatnnnnnnnntatgtcactattccctact 109  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  14237139 aattaactttgatatttaaatgtcatttaatcctaactcatttttatatattgattgagggtatttctgtgataaaaaaattatgtcactattccctact 14237238  T
Q  110 t 110  Q
    |    
T  14237239 t 14237239  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 21039811 - 21039868
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattga 67  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21039811 aattaactttgacatattaatgtcatttaatcctaactcatttttatatattgattga 21039868  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 22504241 - 22504184
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattga 67  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  22504241 aattaactttgacacattaatgtcatttaatcctaactcatttttatatattgattga 22504184  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 5274068 - 5274011
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattga 67  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||    
T  5274068 aattaacttttacacattaatgtcatttaatcctaactcatttttatatattgattga 5274011  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 24729235 - 24729178
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattga 67  Q
    ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||    
T  24729235 aattaactttgacacattaatgtcatttaatcctaactcattttaatatattgattga 24729178  T

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Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 22534122 - 22534252
Alignment:
Q  124 ggatttgtggcgacatttgttgcggttagggttggaagggaaggatgggatgtgggtggagttgttgaagaagaggcggaggccatggtgaagaggagga 223  Q
    ||||||||| |||||||||||||| || ||||||||| ||||||||||| ||  ||||||||||||||||||||||| ||||||||||||||||||||||    
T  22534122 ggatttgtgacgacatttgttgcgtttggggttggaaaggaaggatgggttgcaggtggagttgttgaagaagaggcagaggccatggtgaagaggagga 22534221  T
Q  224 aagtgacgacagaggaggagtggtggaggtg 254  Q
     || |||||  |||||||||||| |||||||    
T  22534222 gagggacgatggaggaggagtggaggaggtg 22534252  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 10897090 - 10897162
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattgagggtatttctgtgat 82  Q
    ||||||||| || |||||||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||    
T  10897090 aattaacttagatattttaatgtcatttaattctaacccgtttttatatattgattgagggtatttatgtgat 10897162  T

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Target: scaffold0562 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 10580 - 10452
Alignment:
Q  126 atttgtggcgacatttgttgcggttagggttggaagggaaggatgggatgtgggtggagttgttgaagaagaggcggaggccatggtgaagaggaggaaa 225  Q
    ||||||| |||||||||||||| || |||||||||  |||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||| |    
T  10580 atttgtgacgacatttgttgcgtttggggttggaaaagaaggatgggttgcaggtggagttgttgaagaagaggcggaggccatggtgaagaggaggaga 10481  T
Q  226 gtgacgacagaggaggagtggtggaggtg 254  Q
    | |||||  |||||||||||| |||||||    
T  10480 gggacgatggaggaggagtggaggaggtg 10452  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 23315 - 23211
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattgagggtatttctgtgatnnnnnnnntatgtcactattccctact 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||    
T  23315 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattgagggtatttatgtgataaaaaaattatgtcactattccctact 23216  T
Q  110 tcaaa 114  Q
    |||||    
T  23215 tcaaa 23211  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 3879746 - 3879618
Alignment:
Q  126 atttgtggcgacatttgttgcggttagggttggaagggaaggatgggatgtgggtggagttgttgaagaagaggcggaggccatggtgaagaggaggaaa 225  Q
    ||||||| |||||||||||||| || |||||||||  |||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||| |    
T  3879746 atttgtgacgacatttgttgcgtttggggttggaaaagaaggatgggttgcaggtggagttgttgaagaagaggcggaggccatggtgaagaggaggaga 3879647  T
Q  226 gtgacgacagaggaggagtggtggaggtg 254  Q
    | |||||  |||||||||||| |||||||    
T  3879646 gggacgatggaggaggagtggaggaggtg 3879618  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 13913971 - 13913905
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattgagggtatttc 76  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13913971 aattaactttgacattttaatgtcatttaatcctagctcatttttatatattgattgagggtatttc 13913905  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 55541495 - 55541577
Alignment:
Q  158 gaagggaaggatgggatgtgggtggagttgttgaagaagaggcggaggccatggtgaagaggaggaaagtgacgacagaggaggag 243  Q
    |||| |||||||| |||| ||||||||||||||||||||||| |||||||   ||||||||||||| || |||||  |||||||||    
T  55541495 gaagtgaaggatgagatgcgggtggagttgttgaagaagaggaggaggcc---gtgaagaggaggagagggacgatggaggaggag 55541577  T

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Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 45050376 - 45050476
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattgagggtatttctgtgatnnnnnnnntatgtcactattccctact 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||        |||||||||||||||||||    
T  45050376 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattgacgatatttctgtgataaaaaaattatgtcactattccctact 45050475  T
Q  110 t 110  Q
    |    
T  45050476 t 45050476  T

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Target: scaffold0191 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 16143 - 16071
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattgagggtatttctgtgat 82  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  16143 aattaactttgacattttaatgtcatttaatcttaactcatttttatatattgattgagggtaattctgtgat 16071  T

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Target: scaffold0018 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 165582 - 165639
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattga 67  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  165582 aattaactttgacacattaatgtcatttaatcctaactcatttttatatattgattga 165639  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 18892429 - 18892372
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactcatttttatatattgattga 67  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  18892429 aattaactttgacacattaatgtcatttaatcctaactcatttttatatattgattga 18892372  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 22820832 - 22820870
Alignment:
Q  10 aattaactttgacattttaatgtcatttaatcctaactc 48  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22820832 aattaactttgacattttaatgtcatttaatcctaactc 22820870  T

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