View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_4 (Length: 696)
Name: NF7504_low_4
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 18 - 681
Target Start/End: Original strand, 2221935 - 2222598
Alignment:
| Q |
18 |
cgaaacaaaccctagcttaaccatcttagcccgattactcctcactaaagacaaatgacaaagtgccaaacccgagtcatggcgcgtcttttcactctct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2221935 |
cgaaacaaaccctagcttaaccatcttagcccgattactcctcactaaagacaaatgacaaagtgccaaacccgagtcatggcgcgtcttttcactctct |
2222034 |
T |
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| Q |
118 |
gatttaagcgcgtgaagcaatggcaaaagagcacctaaaacaccaatcgcagttttattatcatcatcaagcgctaaactaaacatcgcacacgaagcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2222035 |
gatttaagcgcgtgaagcaatggcaaaagagcacctaaaacaccaatcgcagttttattatcatcatcaagcgctaaactaaacatcgcacacgaagcat |
2222134 |
T |
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| Q |
218 |
gttcctgcgattcacacgacccaaacctcaaaacctcaatcaacggtggaacaattcctgaccggactatcttcactttgttaactttctcaagtgaaag |
317 |
Q |
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| T |
2222135 |
gttcctgcgattcacacgatccaaacctcaaaacctcaatcaacggtggaacaattcctgaccggactatcttcactttgttaactttctcaagtgaaag |
2222234 |
T |
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| Q |
318 |
gttgaccaatgaagcaagtgcattgactcttacaacctcgttcttagacaaaatcaaagaacgcagaaaacatagtaccctattggtgcaaagttgaact |
417 |
Q |
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| T |
2222235 |
gttgaccaatgaagcaagtgcattgactcttacaacctcgttcttagacaaaatcaaagaacgcagaaaacatagtaccctattgctgcaaagttgaact |
2222334 |
T |
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| Q |
418 |
ctactttccaaattcgttcttgtgatttttctgagtgagattaaaccttcttctactataaccaattcatggtttctgagttttgttactatttcttctt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2222335 |
ctactttccaaattcgttcttgtgatttttctgagtgagattaaaccttcttctactataaccaattcatggtttctgagttttgttactatttcttctt |
2222434 |
T |
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| Q |
518 |
cttccggtgttgttgaaggttcaagttcagatgaagaaggtgaagagtaacagaaactttgaagctgtggtggtgttgttcttgttgatgatgatgaagt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2222435 |
cttccggtgttgttgaaggttcaagttcagatgaagaaggtgaagagtaacagaaactttgaagctgtggtggtgttgttcttgttgatgatgatgaagt |
2222534 |
T |
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| Q |
618 |
gacagtagctatagattcctctgagcttgagtacgaggtttttcgtggtgttaacattgatatt |
681 |
Q |
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| T |
2222535 |
gacagtagctatagattcctctgagcttgagtaggaggtttttcgtggtgttaacattgatatt |
2222598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 35294371 - 35294456
Alignment:
| Q |
147 |
agcacctaaaacaccaatcgcagttttattatcatcatcaagcgctaaactaaacatcgcacacgaagcatgttcctgcgattcac |
232 |
Q |
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|||||| | ||||||||| || | |||||||||||||| | || |||||||||| ||||| || |||||||||||||||||||| |
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| T |
35294371 |
agcaccaagaacaccaattgccatcttattatcatcatccaaagccaaactaaacaacgcacccgcagcatgttcctgcgattcac |
35294456 |
T |
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