View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_44 (Length: 315)
Name: NF7504_low_44
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 24 - 302
Target Start/End: Complemental strand, 46343795 - 46343517
Alignment:
| Q |
24 |
catttgcagtatttagaagactacaacactctcgtaagcttaggttgtgtgctataactatatgtacttgttgagacttgagaatcaaacaaaactcaag |
123 |
Q |
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| T |
46343795 |
catttgcagtatttagaagactacaacactctcgtaagcttaggttgtgtgctataactatatgtacttgttgagacttgagaatcaaacaaaactcaag |
46343696 |
T |
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| Q |
124 |
cttggaattgtatagagcaataaatttgtaagcatagtccttttggtgaagtgcatataaaatagacattagcaaaattaaaaatacaattgtccagcca |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46343695 |
cttggaattgtatagagcaataaatttgtaagcatagtccttttggtgaagtgcatataaaatagacattagcaaaattaaaaatacaattgtccagcca |
46343596 |
T |
|
| Q |
224 |
ggatttaataaaataaatcctggattgtcagaattcagaaataaaccaaagagaaagcatacagatagatgataaatgt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46343595 |
ggatttaataaaataaatcctggattgtcagaattcagaaataaaccaaagagaaagcatacagatagatgataaatgt |
46343517 |
T |
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