View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7504_low_45 (Length: 312)

Name: NF7504_low_45
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7504_low_45
NF7504_low_45
[»] chr1 (1 HSPs)
chr1 (1-286)||(33035124-33035420)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 33035420 - 33035124
Alignment:
Q  1 atgtcgttgtcatttggtttgttgtggatgtttagatatgtgtgggtttggttcatgctcaattctcgtggttgcttctttgacgaaagtgctggtttgg 100  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33035420 atgtcgttgtcatttggttcgttgtggatgtttagatctgtgtgggtttggtttatgctcaattctcgtggttgcttctttgacgaaagtgctggtttgg 33035321  T
Q  101 tgttcatcaatggttgggcttgctaggttatttcttccgctgtctttcgttgg-----------ttagtggttgaaatggttgctgctcttttgagagta 189  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||           |||||||| ||| |||||||||||||||||||||||    
T  33035320 tgttcatcaatggttgggcttgctaggtgatttcttccgctgtctttcgttggtctctatacaattagtggtggaagtggttgctgctcttttgagagta 33035221  T
Q  190 ttgaaagggaggagattgggattgagtgtgttatttttctttaatgggtggttgaagaatgaaaggtcccataaagcgtgttggttgttaacggttt 286  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  33035220 ttgaaagggaggagattgggattgagtgtgttaattttatttaatgggtggttgaagaatgaacggtcccataaagggtgttggttgttaacggttt 33035124  T

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