View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_49 (Length: 300)
Name: NF7504_low_49
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 27744254 - 27744524
Alignment:
| Q |
20 |
agtcgtcgcggtggttgttttccatatgtgaatcaaggaaacaaaaacaacgccgtgagatgaagaagaagaagcttatcagtgatcctcgatttgtagg |
119 |
Q |
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| T |
27744254 |
agtcgtcgcggtggttgttttccatatgtgaatcaaggaaacaaaaacaacgccgtgagatgaag---aagaagcttatcagtgatcctcgatttgtagg |
27744350 |
T |
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| Q |
120 |
aatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactctcgcttcaagcacatgttcaatgacaattcttttttc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27744351 |
aatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactctcgcttcaagcacatgttcaatgacaattcttttttc |
27744450 |
T |
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| Q |
220 |
tcttattctgcaccaatcgacaagagaggcaggtatatagaaaacaacctcactttaaaatctgattttcttcg |
293 |
Q |
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| T |
27744451 |
tcttattctgcaccaatcgacaagagaggcaggtatatagaaaacaacctcactttaaaatctgattttcttcg |
27744524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 49513261 - 49513321
Alignment:
| Q |
84 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcga |
144 |
Q |
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| T |
49513261 |
gaagaagaagcttatcaatgatcctcggtttgtaggagtgctcacagaccctctttttcga |
49513321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 49513337 - 49513373
Alignment:
| Q |
257 |
tagaaaacaacctcactttaaaatctgattttcttcg |
293 |
Q |
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| T |
49513337 |
tagaaaacaacctcacttttaaatctgattttcttcg |
49513373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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