View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_5 (Length: 695)
Name: NF7504_low_5
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_5 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 647; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 19 - 681
Target Start/End: Complemental strand, 16804060 - 16803398
Alignment:
| Q |
19 |
atgaagcattccaccaattgtgttcattatcttaaccatgtgttttcttttcccccaaataaggtgccaaatattgttgtatcaccgtttatgggtgatg |
118 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16804060 |
atgaagcattccaccaatcgtgttcattatcttaaccatgtgttttcttttcccccaaataaggtgccaaatattgttgtatcaccgtttatgggtgatg |
16803961 |
T |
|
| Q |
119 |
gttatataataagttttttaattggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803960 |
gttatataataagttttttaattggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaa |
16803861 |
T |
|
| Q |
219 |
accatgtttcaacacaacatcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcccaaatgcaaaaatgtagaaaat |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803860 |
accatgtttcaacacaacatcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcccaaatgcaaaaatgtagaaaat |
16803761 |
T |
|
| Q |
319 |
acgcattgctcttccgatgataaaaaggtatgtgaatatagttttacatatggtggtgaggcatattcccaaggagatcttagtatagacactcttactc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803760 |
acgcattgctcttccgatgataaaaaggtatgtgaatatagttttacatatggtggtgaggcatattcccaaggagatcttagtatagacactcttactt |
16803661 |
T |
|
| Q |
419 |
tgaactctaataatgaccctcctatctcatttaaaaatattgtaataggatgcggccatagaaataagggtccacttgagggatatgtatccggaaatat |
518 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803660 |
tgaactctaataatgacactcctatctcatttaaaaatattgtaataggatgcggccatagaaataagggtccacttgagggatatgtatccggaaatat |
16803561 |
T |
|
| Q |
519 |
tggtcttggacgtggacctttgtcttttatatcccaattgaattcttcgattggtggaaaattttcatattgtttggttccgttattttcaaatgaaggt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803560 |
tggtcttggacgtggacctttgtcttttatatcccaattgaattcttcgattggtggaaaattttcatattgtttggttccgttattttcaaatgaaggt |
16803461 |
T |
|
| Q |
619 |
atctcaggcaaactacacttttgagataaatcagtggtttctggtgttgggactgtctcaact |
681 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803460 |
atctcaggcaaactacactttggagataaatcagtggtttctggtgttgggactgtctcaact |
16803398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 38 - 681
Target Start/End: Original strand, 19573208 - 19573845
Alignment:
| Q |
38 |
gtgttcattatcttaaccatgtgttttcttttcccccaaataaggtgccaaatattgttgtatcaccgtttatgggtgatggttatataataagtttttt |
137 |
Q |
| |
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|||||| |||||| |||||||||||||||||| |||||||||| | | | || | | ||||| | |||||||||| ||| ||| |||| |||| || |
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| T |
19573208 |
gtgttcgttatctcaaccatgtgttttctttttccccaaataaaattcaagatgtgcctttatcatcatttatgggtgctggatatgtaatgagttattc |
19573307 |
T |
|
| Q |
138 |
aattggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaaaccatgtttcaacacaaca |
237 |
Q |
| |
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|||||||||||| ||||||||||||||| || |||| ||||| | |||||||| ||||||||||||||||| ||||| ||||||||||| ||| |||| |
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| T |
19573308 |
aattggtacccctccatttcaactttacagtcttattgatacaggaaatgataacatttggtttcaatgtaagccgtgcaaaccatgtttaaaccaaaca |
19573407 |
T |
|
| Q |
238 |
tcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcccaaatgcaaaaatgtagaaaatacgcattgctcttccgatg |
337 |
Q |
| |
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|||||||||||| ||||||||||||| |||||||| ||||||||||| ||| ||||||||| ||||||||||| ||| | ||||||||||||| | | |
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| T |
19573408 |
tcaccaatgtttcacccttcaaaatcatcaacctacaaaaccattccatgcacttctcccatatgcaaaaatgcaga---tgggcattgctcttccaaag |
19573504 |
T |
|
| Q |
338 |
ataaaaaggtatgtgaatatagttttacatatggtggtgaggcatattcccaaggagatcttagtatagacactcttactctgaactctaataatgaccc |
437 |
Q |
| |
|
|| ||||| |||||||||||| | ||||||||||| || | ||||| |||||||||||| || | |||||||||||| |||||||||| |||| | | |
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| T |
19573505 |
attaaaagatatgtgaatataaatatacatatggtgatggg---tattcgcaaggagatcttggtgtcgacactcttactttgaactctaacaatggcac |
19573601 |
T |
|
| Q |
438 |
tcctatctcatttaaaaatattgtaataggatgcggccatagaaataagggtccacttgagggatatgtatccggaaatattggtcttggacgtggacct |
537 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| || ||||||||| |||| ||| | ||||| ||||| || ||||||||||| |||| ||| || ||| |
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| T |
19573602 |
tcctatctcattcaaaaatattgtgattggatgtgggcatagaaatcaggggccattagaggggtatgtctcaggaaatattggccttgcacgcgggcct |
19573701 |
T |
|
| Q |
538 |
ttgtcttttatatcccaattgaattcttcgattggtggaaaattttcatattgtttggttccgttattttcaaatgaaggtatctcaggcaaactacact |
637 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||| |||||||| || ||| | ||| ||||| |||| | |
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|
| T |
19573702 |
ttgtcttttatatcccaattgaattcttcaattggtggaaaattttcttattgtctagttccattattttcgaaggaaaacgtttcaagcaaattacatt |
19573801 |
T |
|
| Q |
638 |
tttgagataaatcagtggtttctggtgttgggactgtctcaact |
681 |
Q |
| |
|
|| ||||||||||| ||||||||| |||| ||||| |||||| |
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| T |
19573802 |
ttggagataaatcaacggtttctggacttggaactgtttcaact |
19573845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 518 - 594
Target Start/End: Complemental strand, 19649341 - 19649265
Alignment:
| Q |
518 |
ttggtcttggacgtggacctttgtcttttatatcccaattgaattcttcgattggtggaaaattttcatattgtttg |
594 |
Q |
| |
|
||||||||||| ||||||| ||||| ||| | | |||||||| ||||| |||||||| |||||||| || |||||| |
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| T |
19649341 |
ttggtcttggaattggacctgtgtctcttacaacacaattgaaatcttcaattggtggtaaattttcttactgtttg |
19649265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 142 - 343
Target Start/End: Complemental strand, 15622 - 15421
Alignment:
| Q |
142 |
ggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaaaccatgtttcaacacaacatcac |
241 |
Q |
| |
|
||||| |||||||| || ||||| |||| ||||||||| | | |||| ||||||||||||||||| ||||||||||||||||| ||| |||||| | |
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|
| T |
15622 |
ggtactccaccattccagctttatggtgctatggatacaggtagtgatggaatttggtttcaatgtaagccgtgtaaaccatgtttaaaccaaacatctc |
15523 |
T |
|
| Q |
242 |
caatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcccaaatgcaaaaatgtagaaaatacgcattgctcttccgatgataa |
341 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||| | | ||||||| |||||||||||| || |||| |
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| T |
15522 |
caatgtttaacccttcaaaatcttcaacctataaaaacattcattgctcttctcccacatgtaaacgtttcgaaaatagccattgctcttccaatcataa |
15423 |
T |
|
| Q |
342 |
aa |
343 |
Q |
| |
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|| |
|
|
| T |
15422 |
aa |
15421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 524 - 613
Target Start/End: Complemental strand, 15237 - 15148
Alignment:
| Q |
524 |
ttggacgtggacctttgtcttttatatcccaattgaattcttcgattggtggaaaattttcatattgtttggttccgttattttcaaatg |
613 |
Q |
| |
|
||||||| |||||||| || || ||||| ||||||| |||||||||| |||||||||||| |||||| | || || ||||||||||||| |
|
|
| T |
15237 |
ttggacgcggacctttatcgttaatatctcaattgagttcttcgattaatggaaaattttcttattgtctcgtgccattattttcaaatg |
15148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 138 - 296
Target Start/End: Original strand, 8894073 - 8894231
Alignment:
| Q |
138 |
aattggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaaaccatgtttcaacacaaca |
237 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||| ||||||| | || ||| || |||||||||||||| || |||||||||||||| ||| |||| |
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| T |
8894073 |
aattggtacccctccatttcagctttatggtgttgtggatacaggcagtgacggaatatggtttcaatgtaagccttgtaaaccatgtttaaaccaaaca |
8894172 |
T |
|
| Q |
238 |
tcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcc |
296 |
Q |
| |
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|| || || ||| ||||||||||||| |||||||| |||| ||| | |||||||||||| |
|
|
| T |
8894173 |
tctccgatatttaacccttcaaaatcatcaacctacaaaaacatccgttgctcttctcc |
8894231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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