View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_50 (Length: 299)
Name: NF7504_low_50
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_50 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 6231 - 6508
Alignment:
| Q |
10 |
caatgcatgatggctaggtgttgatatttttgcagtaatacgttgcaaaaagccagctcaataatactattttttatagaaaaagccagcactagaaaag |
109 |
Q |
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| T |
6231 |
caatgcatgatggctaggtgttgatatttttgcagtaatacgttgcaaaaagtcagctcaataatactattttttatagaaaaagccagcactagaaaag |
6330 |
T |
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| Q |
110 |
ttcatctgcatcaaattagcaatcattttgatattttgacactttcgaatcatagaaatgttaataaatgccagttatac--attcgcaaaatcaacatc |
207 |
Q |
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| T |
6331 |
ttcatgtgcgtcaaattagcaatcattttgatattttgacactttcgaatcatagaaatgttaataaatgccagttatacatattcacaaaatcaacatc |
6430 |
T |
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| Q |
208 |
atattaattgggcatgcagtggccattattatcaaggaaaaaatgaaaattactatatcaagtaagtaagcacatagtg |
286 |
Q |
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| T |
6431 |
atattaattgggcatgcagtggccattattatcaagg-aaaaatgaaaattactatatcaagtaagtaagcacatagtg |
6508 |
T |
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