View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_6 (Length: 611)
Name: NF7504_low_6
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 240 - 611
Target Start/End: Complemental strand, 34243956 - 34243586
Alignment:
| Q |
240 |
ttgaatattcaataagagtgtaggagtcaacaagtcaaattttgattttgacacagtcaacaagtctaatnnnnnnnntacacacatattaatttattca |
339 |
Q |
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| T |
34243956 |
ttgaatattcgataagagtgtaggagtcaacaagtcaaatttttattttgacacagtcaacaagtctaataaaaaaa-tacacacatattaatttattca |
34243858 |
T |
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| Q |
340 |
tttctaataatctcaaattctcaattagccggcaaaagcaggcatagccggcaatgtaaaaagagtgaaagcttcaacttaatcgctatttattaatttg |
439 |
Q |
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| T |
34243857 |
tttctaataatctcaaattctcaattagccggcaaaagcaggcatagccggcaatgtaaaaagagtgaaagcttcaacttaatcgctatttattaatttg |
34243758 |
T |
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| Q |
440 |
tttatatataacactgaaattaagactcataatccaactcaaaaacagagaaaaataaagaaacaatatgagacaagcaggtgcatattcaggtatacta |
539 |
Q |
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| T |
34243757 |
tttatatataacactgaaattaagactcataatccaactcaaaaacagagaaaaataaagaaacaatatgagacaagcaggtgcatattcaggtatacta |
34243658 |
T |
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| Q |
540 |
aattgtggcataggaagaacaggtccacattcattaccattagcaagaataaagaagataatgaagaattct |
611 |
Q |
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| T |
34243657 |
aatggtggcataggaagaacaggtccacattcattaccattagcaagaataaagaagataatgaagaattct |
34243586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 358 - 611
Target Start/End: Complemental strand, 34260371 - 34260118
Alignment:
| Q |
358 |
tctcaattagccggcaaaagcaggcatagccggcaatgtaaaaagagtgaaagcttcaacttaatcgctatttattaatttgtttatatataacactgaa |
457 |
Q |
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| T |
34260371 |
tctcaattagccggcaaaagcaggcttagccggcagtgtaaaaagagtgaaagcatcaacttaatcactgataattaatttgtatttatataacactgaa |
34260272 |
T |
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| Q |
458 |
attaagactcataatccaactcaaaaacagagaaaaataaagaaacaatatgagacaagcaggtgcatattcaggtatactaaattgtggcataggaaga |
557 |
Q |
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| T |
34260271 |
attaacactcataatccaactcaaaaacagagaaaaataaagaaacaatatgagacaagcaggtgcatattcaggtatagtaaatggtggcataggaaga |
34260172 |
T |
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| Q |
558 |
acaggtccacattcattaccattagcaagaataaagaagataatgaagaattct |
611 |
Q |
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| T |
34260171 |
acaggtccacattcattaccattagcaagaataaagaagataatgaagaattct |
34260118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 34244236 - 34244032
Alignment:
| Q |
19 |
ataacactattatgatcaaatttgcttaaaggtataattagaaaatgaaaaaatcaacctaaaatgaactcatttctttatatatagtatagatacttcg |
118 |
Q |
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| T |
34244236 |
ataacactattatgattaaatttgcttaaaattataattagaagaagaaaaaatcaacctaaaatgaactcatttctttatatacagcatagatacttcg |
34244137 |
T |
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| Q |
119 |
ctacaaaaattaaaattctcaataaacaaattgtcttgcactctttttaattacttcatgatttcaaata--tcttaacaaaagcaacatatcaagcttt |
216 |
Q |
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| T |
34244136 |
ctacaaaaattaaaattctcaataaacaaattgtcttgcactctttttaattacttcatgattccaaatatttcttaacaaaagcaacaaatcaagcttt |
34244037 |
T |
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| Q |
217 |
gagtc |
221 |
Q |
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| T |
34244036 |
gagtc |
34244032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 31993242 - 31993195
Alignment:
| Q |
65 |
gaaaaaatcaacctaaaatgaactcatttctttatatatagtatagat |
112 |
Q |
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| T |
31993242 |
gaaaaaatcaacccaaaatgatctactttctttatatatagtatagat |
31993195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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