View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_61 (Length: 265)
Name: NF7504_low_61
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 9604340 - 9604581
Alignment:
| Q |
1 |
aaattgatcaattcatatt-gaaatgtgtaaacttgaaaattgtaaaaacaaaaatataaatcactatttttgaccaaaacctttgttcggtcttgcagc |
99 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9604340 |
aaattgatcaattcatatttgaaatgtgtaaacttgaaaattgtaaaaacaaaaatataaatcactatttttgaccaaaacctttgttc--------agc |
9604431 |
T |
|
| Q |
100 |
caaaatgtgataaatattaagaaacaaatgtagtgaacgcttgagtgtaagtatgtgaccttccattgctccatgagcaacacatgaagtgtgtaagcat |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
9604432 |
caaaatgtgataaatattaagaaacaaatgtagtgaacgcttgagtgtatgtatgtgaccttccattgctccatgagcaacacatgaagtgcgtatgcat |
9604531 |
T |
|
| Q |
200 |
gcacgcttggatcattggaacagcttggatctgtattgcagatatgagaa |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9604532 |
gcacgcttggatcattggaacagcttggatctgtattgcagatatgagaa |
9604581 |
T |
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