View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_63 (Length: 261)
Name: NF7504_low_63
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_63 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 8044558 - 8044312
Alignment:
| Q |
20 |
agattttgtagtacaaaagaaacgtttgaagttatagcagtctagcagactatgaaggttgcttgataattgatatgccaccttaatcccagtgccatag |
119 |
Q |
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| T |
8044558 |
agattttgtagtacaaaagaaacgtttgaagttatagcagtctagcagactatgaaggttgcttgataattgatatgccaccttaatcccagtgccatat |
8044459 |
T |
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| Q |
120 |
gcatttttctaagaaattcgagaaagaaatatacaaaattaaaatacatcgcttgtagaa-----aaagcaagctaatcgatctgaaaatttgctccaga |
214 |
Q |
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| T |
8044458 |
gcatttttctaagaaattcgagaaagaaatatacaaaattaaaatacatcgcttgtagaaaaattaaagcaagctaatcgatctgaaaatttgctccaga |
8044359 |
T |
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| Q |
215 |
agtatactttcatcgtatatttacaagtgccaactatgacgcaacaa |
261 |
Q |
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| T |
8044358 |
agtatactttcatcgtatatttacaagtgccaactatgacgcaacaa |
8044312 |
T |
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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 7969100 - 7969200
Alignment:
| Q |
70 |
tatgaaggttgcttgataattgatatg------ccaccttaatcccagtgccataggcatttttctaagaaattcgagaaagaaatatacaaaattaaaa |
163 |
Q |
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| T |
7969100 |
tatgaaggttgcttgataattgatatgtttatgccacctaaatcccagtgccacaagcatttttctaagaaattggagaaagagatatacaaaattaaaa |
7969199 |
T |
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| Q |
164 |
t |
164 |
Q |
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| T |
7969200 |
t |
7969200 |
T |
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