View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7504_low_66 (Length: 256)

Name: NF7504_low_66
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7504_low_66
NF7504_low_66
[»] chr8 (1 HSPs)
chr8 (130-238)||(3962299-3962408)
[»] chr3 (2 HSPs)
chr3 (1-33)||(53754043-53754075)
chr3 (1-33)||(54021437-54021469)
[»] chr2 (1 HSPs)
chr2 (1-33)||(7213571-7213603)
[»] chr1 (1 HSPs)
chr1 (1-33)||(5359260-5359292)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 3962299 - 3962408
Alignment:
Q  130 ggacaattttctttt-tacaaatgattcaattattttaaaatagaggaaatattaaattagaaaaaacgtatcacatgaaacactagtgtttaagcggca 228  Q
    ||||||||||||||| ||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |    
T  3962299 ggacaattttcttttttacaaatgattcggttaatttagaatagaggaaatattaaattagaaaaaacgtatcacatgaaacactagtatttaagtggta 3962398  T
Q  229 gtggacttct 238  Q
    ||||||||||    
T  3962399 gtggacttct 3962408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 53754043 - 53754075
Alignment:
Q  1 ataaataaaatagagagaaaaatgattttgagt 33  Q
    |||||| ||||||||||||||||||||||||||    
T  53754043 ataaatgaaatagagagaaaaatgattttgagt 53754075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 54021437 - 54021469
Alignment:
Q  1 ataaataaaatagagagaaaaatgattttgagt 33  Q
    |||||||||| ||||||||||||||||||||||    
T  54021437 ataaataaaagagagagaaaaatgattttgagt 54021469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7213603 - 7213571
Alignment:
Q  1 ataaataaaatagagagaaaaatgattttgagt 33  Q
    |||||| ||||||||||||||||||||||||||    
T  7213603 ataaatgaaatagagagaaaaatgattttgagt 7213571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5359260 - 5359292
Alignment:
Q  1 ataaataaaatagagagaaaaatgattttgagt 33  Q
    |||||||||| ||||||||||||||||||||||    
T  5359260 ataaataaaagagagagaaaaatgattttgagt 5359292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University