View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_7 (Length: 606)
Name: NF7504_low_7
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 20 - 594
Target Start/End: Complemental strand, 5461888 - 5461313
Alignment:
| Q |
20 |
aaaaccatggctgccattatgctagaaacctttatattgtagaaaaa-tatggatgatacggtcgaaaatgcaatcgacttcaaaatcatttatatttta |
118 |
Q |
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| T |
5461888 |
aaaaccatggctgccattatgctagaaacctttatattgtagaaaaaatatggatggtacggtcgaaaatgcaatcgacttcaaaatcatttatatttta |
5461789 |
T |
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| Q |
119 |
gaactttgatgttaatgcaggatctgaagaaatcacatgagtaccttgtgacatcatatggtgccgatccaacaggaaattcagatagcactgatgcact |
218 |
Q |
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| T |
5461788 |
gaactttgatgttaatgcaggatctgaagaaatcacatgagtaccttgtgacattatatggtgccgatccaacaggaaattcagatagcactgatgcact |
5461689 |
T |
|
| Q |
219 |
tcttgctgccatagctgatgctgcaaaaggtccaagtaaagggtttttgatgaatggcataattgaccttggaggtgctcaaattaatcttcaaggtgga |
318 |
Q |
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| T |
5461688 |
tcttgctgccatagctgatgctgcaaaaggtccaagtaaagggtttttgatgaatggcataattgaccttggaggtgctcaaattaatcttcaaggtgga |
5461589 |
T |
|
| Q |
319 |
aattacttgatcagcaaacctttgcattttccaatggctggtgttggaaatctcatggtatgtttgcagacaccattcttagtaaattattaggtcaatg |
418 |
Q |
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| T |
5461588 |
aattacttgatcagcaaacctttgcattttccaatggctggtgttggaaatctcatggtatatttgcagacaccattcttagtaaattattaggtcaatg |
5461489 |
T |
|
| Q |
419 |
atctcgaatatgaaaaaacaagtcgaccttcataacttttttacggtaacgctgtaattttgttaaaattttaaagtgtagtttttataatcgtgatttt |
518 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5461488 |
atctcgaatatgaaaaaacaagtctaccttcataacttttttacggtaacgctgtaattttgttaaaattttaaagtgtagtttttatcatcgtgatttt |
5461389 |
T |
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| Q |
519 |
gtcaaacttactttcgatccaaaatatatgtttgaaatcgcagtaagtttgacaaaattatcgacactataatttt |
594 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5461388 |
gtcaaacttactttcaatccaaaatatatgtttgaaatcgcagtaagtttgacaaaattatcgacactataatttt |
5461313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 160 - 332
Target Start/End: Original strand, 15159399 - 15159571
Alignment:
| Q |
160 |
taccttgtgacatcatatggtgccgatccaacaggaaattcagatagcactgatgcacttcttgctgccatagctgatgctgcaaaaggtccaagtaaag |
259 |
Q |
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|||| ||||||||| |||||||| || |||||||| ||||||||||||||||| ||| | ||||| |||||||| ||||| | || ||||||||| ||| |
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| T |
15159399 |
taccatgtgacatcctatggtgcagacccaacaggcaattcagatagcactgaagcattacttgcagccatagcagatgcaaccaatggtccaagtgaag |
15159498 |
T |
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| Q |
260 |
ggtttttgatgaatggcataattgaccttggaggtgctcaaattaatcttcaaggtggaaattacttgatcag |
332 |
Q |
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| T |
15159499 |
gatatttgatggaaggcatcagtaaccttggaggtgcacagattaatcttgaaggtggaaattatatgatcag |
15159571 |
T |
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