View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_74 (Length: 246)
Name: NF7504_low_74
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_74 |
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| [»] scaffold0415 (1 HSPs) |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: scaffold0415 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 15027 - 15244
Alignment:
| Q |
13 |
aagaatatcacaggaaaagtagcttgtcagattaaagtagggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatag |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15027 |
aagattatcacaggaaaagtagcttgtcagattaaagtagggtcccaaaatttgtgcatagaaagaatcagtacaggaaaatcatttgcttttaggatag |
15126 |
T |
|
| Q |
113 |
taaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctgg |
212 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15127 |
taaacaaaaatggagaaatcattgcagaggcaaagcaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctgg |
15226 |
T |
|
| Q |
213 |
aacggatcattcccttat |
230 |
Q |
| |
|
|||||||||||||||||| |
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| T |
15227 |
aacggatcattcccttat |
15244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 40817337 - 40817120
Alignment:
| Q |
13 |
aagaatatcacaggaaaagtagcttgtcagattaaagtagggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatag |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40817337 |
aagattatcacaggaaaagtagcttgtcagattaaagtagggtcccaaaatttgtgcatagaaagaatcagtacaggaaaatcatttgcttttaggatag |
40817238 |
T |
|
| Q |
113 |
taaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctgg |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40817237 |
taaacaaaaatggagaaatcattgcagaggcaaagcaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctgg |
40817138 |
T |
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| Q |
213 |
aacggatcattcccttat |
230 |
Q |
| |
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|||||||||||||||||| |
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| T |
40817137 |
aacggatcattcccttat |
40817120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 40825893 - 40825686
Alignment:
| Q |
23 |
caggaaaagtagcttgtcagattaaagtagggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaa |
122 |
Q |
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|||| ||| ||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40825893 |
cagggaaaatagcttgccagattaaagtgggatcccaaaatatgtgcatagaaagaatcagcataggaaaatcatttgcttttaggatagtaaacaaaaa |
40825794 |
T |
|
| Q |
123 |
tggagaaatcattgcagaggcaaaacaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcat |
222 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
40825793 |
tggagaaatcattgcagaggcaaagcaaaaacagtcttcatcaggggttgttctgagtaatgatgttctaactttggatttggcggctggcgtggatcat |
40825694 |
T |
|
| Q |
223 |
tcccttat |
230 |
Q |
| |
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|||||||| |
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| T |
40825693 |
tcccttat |
40825686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 32 - 230
Target Start/End: Complemental strand, 40807062 - 40806864
Alignment:
| Q |
32 |
tagcttgtcagattaaagtagggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaat |
131 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
40807062 |
tagcttgccagattaaagtggggtgccaaaatttgtgtatagaaagaatcagtataggaaaatcatttgcttttaggattataaacaaagatggagaaat |
40806963 |
T |
|
| Q |
132 |
cattgcagaggcaaaacaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttat |
230 |
Q |
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||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
40806962 |
cattgcagaggcaaagcaaaaactgtcgtcatccggggttgttctgagtaatgatattctaactttggatttggcggctggcacggatcattctcttat |
40806864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 40805359 - 40805150
Alignment:
| Q |
13 |
aagaatatcacaggaaaagtagcttgtcagattaaagtagggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatag |
112 |
Q |
| |
|
|||| ||| ||||| ||| ||||||| ||||||||||| |||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40805359 |
aagattattacagggaaaatagcttgccagattaaagtggggtgccaaaatttatgcatagaaagaatcagtataggaaaatcatttgcttttcggatag |
40805260 |
T |
|
| Q |
113 |
taaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctgg |
212 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||| ||||||||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| ||||| |
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| T |
40805259 |
taaacaaagatggacaaatcattgcagatgcaaagcaaaaacagtcatcgtcaggggttgttctaagtaatgatgttctaacgttggacttggccgctgg |
40805160 |
T |
|
| Q |
213 |
aacggatcat |
222 |
Q |
| |
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|||||||||| |
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| T |
40805159 |
aacggatcat |
40805150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 40812159 - 40811960
Alignment:
| Q |
32 |
tagcttgtcagattaaagtagggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaat |
131 |
Q |
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|
||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
40812159 |
tagcttgccagattaaagtggggagccaaaatttgtgtatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggagaaat |
40812060 |
T |
|
| Q |
132 |
cattgcagaggcaaaacaaaaacagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttatt |
231 |
Q |
| |
|
|||||| |||||||| ||||||||||| || || ||||||||||||||||| ||||||||||| ||||||||||| | || |||||||||||||||| |
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| T |
40812059 |
cattgctgaggcaaagcaaaaacagtcatcctcaggggttgttctgagtaacgatgttctaacgttggatttggccaccggcgtggatcattcccttatt |
40811960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 7567 - 7767
Alignment:
| Q |
32 |
tagcttgtcagattaaagtagggtcccaaaatatgtgcatagaaagaatcagtataggaaaatcatttgctttt-aggatagtaaacaaaaatggagaaa |
130 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
7567 |
tagcttgccagattaaagtggggtgccaaaatttgtgtatagaaagaatcagtataggaaaatcatttgctttttaggattataaacaaagatggagaaa |
7666 |
T |
|
| Q |
131 |
tcattgcagaggcaaaacaaaaa-cagtcttcatccggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattccctta |
229 |
Q |
| |
|
|||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||| |
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|
| T |
7667 |
tcattgcagaggcaaagcaaaaaactgtcgtcatccggggttgttctgagtaatgatattctaactttggatttggcggctggcacggatcattctctta |
7766 |
T |
|
| Q |
230 |
t |
230 |
Q |
| |
|
| |
|
|
| T |
7767 |
t |
7767 |
T |
|
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