View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7504_low_76 (Length: 245)
Name: NF7504_low_76
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_76 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 80 - 232
Target Start/End: Complemental strand, 43779788 - 43779636
Alignment:
| Q |
80 |
gaagaaaaaacctcttatttttcttagtagttagaaaatgttttaaatgtaacttgcattttgttcaatatgttcagttttgaatattgagtaacttact |
179 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43779788 |
gaagaaaaaacctattatttttcttagaagttagaaaatgttttaaatgtaacttgcattttgttcaatatgttcagttttgaatattgagtaacttact |
43779689 |
T |
|
| Q |
180 |
tggacagttacttcatatctgcactattctgttctatggtttgtgagtttctg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43779688 |
tggacagttacttcatatctgcactattctgttctatggtttgtgagtttctg |
43779636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 43769540 - 43769375
Alignment:
| Q |
27 |
atcttgcagtatccacatattgttttcttttgatttaattgtctgcaaagggagaagaaaaaa-cctcttatttttcttagtagttagaaaatgttttaa |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||| || |
|
|
| T |
43769540 |
atcttgcagtatccacatattgttttcttttgatttaattgtctataaagggagaagaaaaaaacctcttatttttcttggaagttagaaaatgtttcaa |
43769441 |
T |
|
| Q |
126 |
atgtaacttgcattttgttcaatatgttcagttttgaatattgagtaacttacttggacagttact |
191 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43769440 |
atgtaacttgcattttgttcagtatgttaagttttgaatattgagtaacttacttggatagttact |
43769375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43779836 - 43779789
Alignment:
| Q |
1 |
ataactcacacttgcacacaacaacaatcttgcagtatccacatattg |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43779836 |
ataactcacacttgcacacaacaacaatcttgcagtatccacatattg |
43779789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 43786114 - 43786071
Alignment:
| Q |
189 |
acttcatatctgcactattctgttctatggtttgtgagtttctg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43786114 |
acttcatatctgcactattctgttctatggtttgtgagcttctg |
43786071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 41184568 - 41184597
Alignment:
| Q |
1 |
ataactcacacttgcacacaacaacaatct |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41184568 |
ataactcacacttgcacacaacaacaatct |
41184597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University