View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7504_low_78 (Length: 243)

Name: NF7504_low_78
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7504_low_78
NF7504_low_78
[»] chr3 (4 HSPs)
chr3 (19-243)||(32497622-32497847)
chr3 (21-90)||(39149183-39149252)
chr3 (45-97)||(34722990-34723042)
chr3 (19-91)||(40892842-40892914)
[»] chr1 (3 HSPs)
chr1 (19-91)||(43143263-43143335)
chr1 (19-91)||(14171863-14171935)
chr1 (19-91)||(26127309-26127381)
[»] chr5 (2 HSPs)
chr5 (19-126)||(5091832-5091939)
chr5 (19-91)||(932163-932234)
[»] chr7 (1 HSPs)
chr7 (19-97)||(28359735-28359813)
[»] chr6 (2 HSPs)
chr6 (21-91)||(2667396-2667466)
chr6 (19-91)||(31330568-31330640)
[»] chr2 (5 HSPs)
chr2 (19-92)||(6599336-6599410)
chr2 (19-91)||(45716441-45716513)
chr2 (31-91)||(17437442-17437500)
chr2 (19-91)||(7820074-7820146)
chr2 (19-91)||(8329699-8329771)
[»] chr4 (4 HSPs)
chr4 (19-90)||(36619873-36619944)
chr4 (18-92)||(48743512-48743586)
chr4 (19-91)||(36860342-36860412)
chr4 (45-89)||(37858387-37858432)
[»] chr8 (1 HSPs)
chr8 (47-91)||(13101486-13101530)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 32497847 - 32497622
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaaccgatgccctaggggcatcggttgataa 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || | | || | |||||||||||||    
T  32497847 actttttgaaagtttaaaaaatgttattttcaatgcaaattttgtattttctttccatttttagtttcttaaccaatactccagagacatcggttgataa 32497748  T
Q  119 caccctttaaataatttaggaattaaattgaagaaataagactcgagaacga-ttttgttggaaatgatttttaacctaacatttacttacctcacaacc 217  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  32497747 caccctttaaataatttaggaattaaattgaaaagataagactcgagaacgatttttgatggaaatgatttttgacctaacatttacctacctcacaacc 32497648  T
Q  218 aaactttagattaccagacccttttc 243  Q
    |||||||||||||| |||||||||||    
T  32497647 aaactttagattacgagacccttttc 32497622  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 39149183 - 39149252
Alignment:
Q  21 tttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaa 90  Q
    ||||| |||||| ||| | |||||||||||||||||||| | | ||||||||| | ||||| ||||||||    
T  39149183 tttttaaaagttgaaatattgttattttcaatgcaaatcatatcttttctttctacttttaatttcttaa 39149252  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 34723042 - 34722990
Alignment:
Q  45 ttttcaatgcaaatcttgtattttctttccatttttagtttcttaaccgatgc 97  Q
    |||| |||||||||| ||| |||||||| || |||||||||||||||| ||||    
T  34723042 tttttaatgcaaatcatgtcttttcttttcacttttagtttcttaaccaatgc 34722990  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 40892842 - 40892914
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    |||||||||||||| | ||| |||| ||||||||||||| ||||  ||| ||||| | |||||||| ||||||    
T  40892842 actttttgaaagttaataaagtgttcttttcaatgcaaaacttgactttcctttctacttttagttccttaac 40892914  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 43143263 - 43143335
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||||| | ||||| |||||||||    
T  43143263 actttttgaaagttgaaaaaatgttattttcaatataaatcttgtattttctttctacttttattttcttaac 43143335  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 14171863 - 14171935
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    |||||||||||||| |||||||||| ||||||||||||| |||   ||||||||| | |||||||| ||||||    
T  14171863 actttttgaaagttaaaaaaatgtttttttcaatgcaaaacttcacttttctttctacttttagttccttaac 14171935  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 26127309 - 26127381
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    |||||||||||||| ||||| |||||||||||||| |||  |||  ||||||||| | |||||||| ||||||    
T  26127309 actttttgaaagttaaaaaagtgttattttcaatgtaaaatttgacttttctttctacttttagttccttaac 26127381  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 5091832 - 5091939
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaaccgatgccctaggggcatcggttgataa 118  Q
    |||||||||||||| ||||| || | |||||||  |||||||||| ||||||||| | ||||||||||||||||  |||||  |||||| ||||| | ||    
T  5091832 actttttgaaagttgaaaaagtgctcttttcaaaacaaatcttgtcttttctttctacttttagtttcttaacctgtgccccgggggcaccggttaacaa 5091931  T
Q  119 cacccttt 126  Q
     |||||||    
T  5091932 gacccttt 5091939  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 932163 - 932234
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    ||||||| |||||| |||||||||| ||||||||||||| |||| ||||| |||| | |||||||| ||||||    
T  932163 acttttttaaagttaaaaaaatgttcttttcaatgcaaaacttg-attttttttctacttttagttccttaac 932234  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 28359735 - 28359813
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaaccgatgc 97  Q
    |||||||||||||| ||||| || |||||||||||||||  |||  ||||||||| | |||||||| ||||||||||||    
T  28359735 actttttgaaagttaaaaaagtgatattttcaatgcaaaatttgacttttctttctacttttagttccttaaccgatgc 28359813  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 2667396 - 2667466
Alignment:
Q  21 tttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    ||||| |||||| ||||| |||| ||||||||||||| |||  |||||||||| |||||||||| ||||||    
T  2667396 ttttttaaagttaaaaaagtgttcttttcaatgcaaaacttaaattttctttctatttttagttccttaac 2667466  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 31330568 - 31330640
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    |||||||||||||| ||||| |||| |||| |||  ||| ||||  ||||||||| |||||||||| ||||||    
T  31330568 actttttgaaagttaaaaaagtgttctttttaatataaaacttgacttttctttctatttttagttccttaac 31330640  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 6599410 - 6599336
Alignment:
Q  19 actttttgaaagtttaaaaaa-tgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaacc 92  Q
    |||||||||||||| |||||| |||  ||||||||||||| ||||  ||||||||| | ||||||||||||||||    
T  6599410 actttttgaaagttaaaaaaaatgtacttttcaatgcaaaacttgacttttctttctacttttagtttcttaacc 6599336  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 45716513 - 45716441
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    |||||||||||||| ||||| ||||||||||||| ||||  |||  ||||||||| | |||||||| ||||||    
T  45716513 actttttgaaagttaaaaaagtgttattttcaatacaaaatttgacttttctttctacttttagttccttaac 45716441  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 17437442 - 17437500
Alignment:
Q  31 tttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    |||||||| ||||||||||||||||||| || |||||  |||| | |||||||||||||||    
T  17437442 tttaaaaagtgttattttcaatgcaaattttatattt--tttctaattttagtttcttaac 17437500  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 7820074 - 7820146
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    |||||||||||||| ||||||| |||| |||||||||||  ||   ||||||||| | |||||||| ||||||    
T  7820074 actttttgaaagttaaaaaaatattatgttcaatgcaaaaattaatttttctttctacttttagttccttaac 7820146  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 8329699 - 8329771
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    |||||||||||||| |||   |||| |||| |||||||| |||| |||||||||| | |||||||| ||||||    
T  8329699 actttttgaaagttaaaatggtgttctttttaatgcaaaacttgaattttctttctacttttagttccttaac 8329771  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 36619944 - 36619873
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaa 90  Q
    ||||||| |||||||||| | |||| ||||||||| |||  |||  ||||||||| ||||||||||||||||    
T  36619944 actttttaaaagtttaaatagtgttcttttcaatgtaaaatttgacttttctttctatttttagtttcttaa 36619873  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 48743512 - 48743586
Alignment:
Q  18 cactttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaacc 92  Q
    |||||||||||| || |||||||||| |||| ||||||||  |||  ||||||||| | |||||||| |||||||    
T  48743512 cactttttgaaaattaaaaaaatgttgtttttaatgcaaaatttgatttttctttctacttttagttccttaacc 48743586  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 36860342 - 36860412
Alignment:
Q  19 actttttgaaagtttaaaaaatgttattttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    |||||||||||  |||||||| ||||||||||||||||| |||   |||| |||| | |||||||||||||||    
T  36860342 actttttgaaa--ttaaaaaaagttattttcaatgcaaaacttaacttttatttctacttttagtttcttaac 36860412  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 37858432 - 37858387
Alignment:
Q  45 ttttcaatgcaaatcttgtattttctttcca-tttttagtttctta 89  Q
    ||||||||||||||| ||||||||||||| | ||||||||||||||    
T  37858432 ttttcaatgcaaatcatgtattttctttctactttttagtttctta 37858387  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 13101530 - 13101486
Alignment:
Q  47 ttcaatgcaaatcttgtattttctttccatttttagtttcttaac 91  Q
    |||||||| ||| ||| ||||||||||||||||||||| ||||||    
T  13101530 ttcaatgctaattttgcattttctttccatttttagttgcttaac 13101486  T

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