View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_82 (Length: 231)
Name: NF7504_low_82
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_82 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 44 - 231
Target Start/End: Original strand, 32836468 - 32836654
Alignment:
| Q |
44 |
acaagaaccttagtctaatttcctccctttaattttgaaagttacagtaaaaataaggtagcctttgaatactttttaactaaaaaacaaccaaacctat |
143 |
Q |
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| T |
32836468 |
acaagaaccttagtctaatttcctccctttaattttgaaagttacagtaaaaataaggtagcctttgaatactttttaactaaaaaacaatcaaacctat |
32836567 |
T |
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| Q |
144 |
aaagtagtatgataaccaaaatgcataacatttgacagcttaaggttagtacaactgtaggatgaccaatatgaaagcaaagtagaat |
231 |
Q |
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| T |
32836568 |
aaagtagtatgataaccaaaatgcataacatttgacagcttaa-gttagtacaactgtaggatgaccaatatgaaagcaaagtagaat |
32836654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 32836418 - 32836446
Alignment:
| Q |
1 |
attgaacataacacatgaaccatagtcta |
29 |
Q |
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| T |
32836418 |
attgaacataacacatgaaccatagtcta |
32836446 |
T |
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