View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7504_low_87 (Length: 202)
Name: NF7504_low_87
Description: NF7504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7504_low_87 |
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| [»] scaffold0415 (1 HSPs) |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: scaffold0415 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 15079 - 15244
Alignment:
| Q |
21 |
tgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatc |
120 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15079 |
tgtgcatagaaagaatcagtacaggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaagcaaaaacagtcttcatc |
15178 |
T |
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| Q |
121 |
cggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttat |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15179 |
cggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttat |
15244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 40817285 - 40817120
Alignment:
| Q |
21 |
tgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatc |
120 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40817285 |
tgtgcatagaaagaatcagtacaggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaagcaaaaacagtcttcatc |
40817186 |
T |
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| Q |
121 |
cggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttat |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40817185 |
cggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttat |
40817120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 40825855 - 40825686
Alignment:
| Q |
17 |
aatatgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtctt |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40825855 |
aatatgtgcatagaaagaatcagcataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaagcaaaaacagtctt |
40825756 |
T |
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| Q |
117 |
catccggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttat |
186 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
40825755 |
catcaggggttgttctgagtaatgatgttctaactttggatttggcggctggcgtggatcattcccttat |
40825686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 40807029 - 40806864
Alignment:
| Q |
21 |
tgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatc |
120 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||| ||||| |
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| T |
40807029 |
tgtgtatagaaagaatcagtataggaaaatcatttgcttttaggattataaacaaagatggagaaatcattgcagaggcaaagcaaaaactgtcgtcatc |
40806930 |
T |
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| Q |
121 |
cggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttat |
186 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
40806929 |
cggggttgttctgagtaatgatattctaactttggatttggcggctggcacggatcattctcttat |
40806864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 40805305 - 40805150
Alignment:
| Q |
23 |
tgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatccg |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||| ||||||||||| || || | |
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| T |
40805305 |
tgcatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggacaaatcattgcagatgcaaagcaaaaacagtcatcgtcag |
40805206 |
T |
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| Q |
123 |
gggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcat |
178 |
Q |
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|||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
40805205 |
gggttgttctaagtaatgatgttctaacgttggacttggccgctggaacggatcat |
40805150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 40812126 - 40811960
Alignment:
| Q |
21 |
tgtgcatagaaagaatcagtataggaaaatcatttgcttttaggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaacagtcttcatc |
120 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||||||| || || |
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| T |
40812126 |
tgtgtatagaaagaatcagtataggaaaatcatttgcttttcggatagtaaacaaagatggagaaatcattgctgaggcaaagcaaaaacagtcatcctc |
40812027 |
T |
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| Q |
121 |
cggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttatt |
187 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||| | || |||||||||||||||| |
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| T |
40812026 |
aggggttgttctgagtaacgatgttctaacgttggatttggccaccggcgtggatcattcccttatt |
40811960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 7600 - 7767
Alignment:
| Q |
21 |
tgtgcatagaaagaatcagtataggaaaatcatttgctttt-aggatagtaaacaaaaatggagaaatcattgcagaggcaaaacaaaaa-cagtcttca |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||| | ||| ||| |
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| T |
7600 |
tgtgtatagaaagaatcagtataggaaaatcatttgctttttaggattataaacaaagatggagaaatcattgcagaggcaaagcaaaaaactgtcgtca |
7699 |
T |
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| Q |
119 |
tccggggttgttctgagtaatgatgttctaactttggatttggctgctggaacggatcattcccttat |
186 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||| |
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| T |
7700 |
tccggggttgttctgagtaatgatattctaactttggatttggcggctggcacggatcattctcttat |
7767 |
T |
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