View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7505_low_1 (Length: 390)
Name: NF7505_low_1
Description: NF7505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7505_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 54221023 - 54221403
Alignment:
| Q |
1 |
gattgttcctcctgaaaaagggtatggaaaaaagggaatgaatgagattccggtaaagatctgttctcgtcatctcatgtcttccaacatagattctaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
54221023 |
gattgttcctcctgaaaaagggtatggaaaaaagggaatgaatgagattccggtaaagatctgttcttgtcatctcatgtctttcaacatagattctaat |
54221122 |
T |
|
| Q |
101 |
ttaacttccttaaattctgcttttcattgttgatcctg-------catctagcaaatctattgaaacatacacttaggacaagtgccttaagcgttgtta |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
54221123 |
ttaacttccttaaattctgcttttcattgttgatcctgatgtccccatctagcaaatctattgaaacatacacttaggacaagtgccttaagcgttgtca |
54221222 |
T |
|
| Q |
194 |
tgaaagttgttttgccactctgttatgctcacctccactattttatttgtacatttcactttttactcattgttgattagatataggttatggacaataa |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54221223 |
tgaaagttgttttgccactctgttatgctcacctccactattttatttgtacatttcactttttactcattgttgattagatataggttatggacaataa |
54221322 |
T |
|
| Q |
294 |
tatgtaggaaaaatattgttctcttcaacgaaaatgacaaacctacaccatgcggttcttgaactttgtttatgttgttac |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54221323 |
tatgtaggaaaaatattgttctcttcaacgaaaatgacaaacctacaccatgcggttcttgaactttgtttatgttgttac |
54221403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University