View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7506_high_1 (Length: 759)
Name: NF7506_high_1
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 1 - 741
Target Start/End: Original strand, 40039483 - 40040223
Alignment:
| Q |
1 |
cagcaccatgttccaacaaaaccttaacactctttattctacccttgaatgaagcccaatgtagtggggtccacccattctgatcttttctattcacttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40039483 |
cagcaccatgttccaacaaaaccttaacactctttattctacccttgaatgaagcccaatgtagtggggtccacccattctgatcttttctattcacttc |
40039582 |
T |
|
| Q |
101 |
cgctcctttccctaaacacttcttcagcgcgtgtacatcgtccacacgcgccgctcgtagaagcgcgtcgccccaacgtagtacaccgaacaagcgcgtg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40039583 |
cgctccttcccctaaacacttcttcagcgcgtgtacatcgtccacacgcgccgcttgtagaagcgcgtcgccccaacgtagtacaccgaacaagcgcgtg |
40039682 |
T |
|
| Q |
201 |
tgtccactctccgatgctatttcaaacgctgttttaccgtttaactctcttgcgtattttacgttggagttttctagtaaaaactcaaccgcttttaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
40039683 |
tgtccactctccgatgctatttcaaacgctgttttaccgtttaactctcttgcgtattttacgtcggagttttctagtaaaaactcaactgcttttaaat |
40039782 |
T |
|
| Q |
301 |
gatttttccacgctccgtgatgtagtggtgtccaccgtcgggaatcaacggcgttagcgtttcctccgattgaaacgaaaaactcaattatactcacgtg |
400 |
Q |
| |
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||||| || ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
40039783 |
gatttctcgacgctgcgtgatgaagtggtgtccaccgtcgggaatcaacggcgttagcgtttcctccgattgaaacaaaaaactcaattaaactcacgtg |
40039882 |
T |
|
| Q |
401 |
accttcactcgccgccacgtgaatcggtgtcatcatttctctgttcaccgaattcacatccaattcgtcgcagaaagattcaaacaaaaactttacaaca |
500 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40039883 |
accttcactcgccgatacgtgaatcggtgtcatcatttctctgttcaccgaattcacatccaattcgtcgcagaaagattcaaacaaaaactttacaaca |
40039982 |
T |
|
| Q |
501 |
tcgactctatctattgttgcagcttcatgtaaaacaaaatccactgaatcgttgattctgcatccgttagctacaagaagcttcaaaacatcgagtttcc |
600 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40039983 |
tcgactctatctattattgcagcttcatgcaaaacaaaatccactgaatcgttgattctgcatccgttagctacaagaagcttcaaaacagcgagtttcc |
40040082 |
T |
|
| Q |
601 |
cagttcttatcgcaaacggaataagggatttaccgtttgaatctctaaaattcacatctccaccggcggcgattagatcggtaacgtattcaactttccc |
700 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
40040083 |
cagttcttatcgcaaacggaataagcgatttaccgtttgaatctctaaaattcacatctccaccagcggtgattagatcggtaacgtattcaactttccc |
40040182 |
T |
|
| Q |
701 |
gctttcaaccgcgggtttcatcaaattcgtgagattcgatt |
741 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40040183 |
gctttcaaccgcgggtttcatcaaattcgtgagattcgatt |
40040223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 446 - 673
Target Start/End: Complemental strand, 19620215 - 19619988
Alignment:
| Q |
446 |
caccgaattcacatccaattcgtcgcagaaagattcaaacaaaaactttacaacatcgactctatctattgttgcagcttcatgtaaaacaaaatccact |
545 |
Q |
| |
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||||||||||||||||||||| | || ||||||||| |||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||| |
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| T |
19620215 |
caccgaattcacatccaattcattgctgaaagattccaacaaaaactttacaacatcgattatatccattgttgcagctttgtgtaaaacaaaatccact |
19620116 |
T |
|
| Q |
546 |
gaatcgttgattctgcatccgttagctacaagaagcttcaaaacatcgagtttcccagttcttatcgcaaacggaataagggatttaccgtttgaatctc |
645 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| | || |||||| ||||||| ||||||| |||||||||| |
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| T |
19620115 |
gaatcgttaattctgcatccattagctacaagaagcttcaaaacatcgagtttccctgttttgattgcaaacagaataagcgatttacaatttgaatctc |
19620016 |
T |
|
| Q |
646 |
taaaattcacatctccaccggcggcgat |
673 |
Q |
| |
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||||||| ||||||| | ||||| |||| |
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|
| T |
19620015 |
taaaatttacatctcaatcggcgacgat |
19619988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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