View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7506_high_13 (Length: 398)
Name: NF7506_high_13
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_high_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 146 - 398
Target Start/End: Original strand, 40299994 - 40300250
Alignment:
| Q |
146 |
ttcaccttcatggcatattcttgagatgggaatccatgagaagccattacacaaagtttctgactcatcatcgnnnnnnnnnnnnnn---gttgagagag |
242 |
Q |
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| T |
40299994 |
ttcaccttcatggcatattcttgagatgggaatccatgagaagccattacacaaagtttctgactcatcatcgtttttttttttttttttgttgagagag |
40300093 |
T |
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| Q |
243 |
aattttggttttataaaccaaaattcccctcctttagtggctctatcaaaaacacgagttatctttattgtttgaactttttaaacgcaa-nnnnnnnnn |
341 |
Q |
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| T |
40300094 |
aattttggttttataaaccaaaattcccctcctttagtggctctatcaaaaacacgagttatctttattgtttgaactttttaaacgcaatttttttttt |
40300193 |
T |
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| Q |
342 |
ggttggtgtaattgatttttgggtggtgacgaaaatattgaaaataaaattgttttt |
398 |
Q |
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| T |
40300194 |
ggttggtgtaattgatttttgggtggtgacgaaaatattgaaaataaaattgttttt |
40300250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 40299859 - 40299911
Alignment:
| Q |
13 |
aatatctggttttggtgcgtaacaaggcaccaattgttgacaaccctatcatc |
65 |
Q |
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| T |
40299859 |
aatatctggttttggtgcgtaacaaggcaccaattgttgacaaccctatcatc |
40299911 |
T |
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