View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7506_high_2 (Length: 727)

Name: NF7506_high_2
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7506_high_2
NF7506_high_2
[»] chr2 (7 HSPs)
chr2 (20-378)||(1242656-1242999)
chr2 (554-706)||(1242330-1242480)
chr2 (630-710)||(3258037-3258116)
chr2 (243-378)||(5051306-5051441)
chr2 (554-614)||(3257988-3258047)
chr2 (243-378)||(36592822-36592957)
chr2 (630-710)||(5050990-5051069)
[»] chr7 (10 HSPs)
chr7 (554-706)||(40074611-40074761)
chr7 (569-710)||(15121814-15121953)
chr7 (251-378)||(40074310-40074437)
chr7 (567-710)||(26199228-26199368)
chr7 (243-378)||(36934161-36934296)
chr7 (626-710)||(5893329-5893412)
chr7 (554-616)||(47588718-47588779)
chr7 (243-378)||(26199702-26199837)
chr7 (554-617)||(36933926-36933988)
chr7 (243-360)||(5892950-5893067)
[»] chr6 (6 HSPs)
chr6 (243-378)||(22696464-22696599)
chr6 (554-710)||(22696141-22696296)
chr6 (556-612)||(14287360-14287416)
chr6 (633-709)||(34503371-34503445)
chr6 (568-615)||(11444808-11444855)
chr6 (303-378)||(24045613-24045688)
[»] chr4 (15 HSPs)
chr4 (554-709)||(23532946-23533101)
chr4 (554-705)||(50589172-50589324)
chr4 (568-709)||(8817187-8817330)
chr4 (243-374)||(14792158-14792289)
chr4 (243-374)||(12888167-12888298)
chr4 (243-378)||(18357013-18357148)
chr4 (243-378)||(18431659-18431794)
chr4 (554-668)||(14791877-14791988)
chr4 (554-617)||(28149615-28149678)
chr4 (557-709)||(51407668-51407824)
chr4 (630-680)||(28149665-28149715)
chr4 (243-378)||(51407335-51407468)
chr4 (245-378)||(3915235-3915368)
chr4 (633-710)||(12887878-12887954)
chr4 (663-708)||(55728190-55728235)
[»] chr3 (8 HSPs)
chr3 (554-710)||(51057145-51057305)
chr3 (243-378)||(25498758-25498893)
chr3 (554-695)||(25498448-25498590)
chr3 (243-378)||(51056834-51056968)
chr3 (629-682)||(17114057-17114109)
chr3 (283-378)||(38258744-38258839)
chr3 (243-378)||(49358497-49358632)
chr3 (554-616)||(17113980-17114041)
[»] chr8 (7 HSPs)
chr8 (554-710)||(19554636-19554788)
chr8 (568-705)||(19411660-19411793)
chr8 (243-378)||(38149525-38149660)
chr8 (634-680)||(5324219-5324264)
chr8 (633-710)||(20516294-20516370)
chr8 (243-337)||(20518976-20519070)
chr8 (324-378)||(32919597-32919651)
[»] chr1 (6 HSPs)
chr1 (245-378)||(27109768-27109901)
chr1 (554-709)||(32947238-32947391)
chr1 (564-676)||(27109476-27109585)
chr1 (626-710)||(39629232-39629315)
chr1 (243-316)||(32946941-32947014)
chr1 (662-710)||(14351756-14351804)
[»] scaffold0005 (2 HSPs)
scaffold0005 (243-374)||(47442-47573)
scaffold0005 (554-668)||(47743-47854)
[»] chr5 (5 HSPs)
chr5 (554-709)||(27632533-27632686)
chr5 (559-677)||(33757758-33757879)
chr5 (243-378)||(33758088-33758221)
chr5 (243-378)||(9436337-9436472)
chr5 (554-709)||(9436027-9436182)
[»] scaffold0015 (1 HSPs)
scaffold0015 (554-682)||(79531-79658)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 20 - 378
Target Start/End: Complemental strand, 1242999 - 1242656
Alignment:
Q  20 atgtggagcctacatatttcatgtgtaccattttaatttcaaccaatnnnnnnngtgtcttagaaaatgtgttctactttactagcattcctcataaaat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||| ||   ||||||||||    
T  1242999 atgtggagcctacatatttcatgtgtaccattttaatttcaaccaataaaaaa-gtgtgttagaaaatgtgttctactttactaaca---ctcataaaat 1242904  T
Q  120 atttgatgttaatccatcaaaataaaaaccaaaataaatactctacatgaccactttttaatatgaacttattttattgtgactgtaacaaaacaccact 219  Q
    ||||||||||||||||||||||||||            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1242903 atttgatgttaatccatcaaaataaa------------tactccacatgaccactttttaatatgaacttattttattgtgactgtaacaaaacaccact 1242816  T
Q  220 gatcaaaaccaagaaattgaatatttt-ggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgacca 318  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||| |||   | ||||||||||||||||||||||||||||||||||||||||||| |    
T  1242815 gatcaaaaccaagaaattgaatatttttggtggcgtgaggaggtgttggtggatgttcaacaactgggttcgatcataacattttcatccggttcgacta 1242716  T
Q  319 ctacattatatggtggtttgtcgagatggatcgatgatgttgctactgtgaaggtggatt 378  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1242715 ctacattatctggtggtttgtcgagatggatcgatgatgttgctgctgtgaaggtggatt 1242656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 554 - 706
Target Start/End: Complemental strand, 1242480 - 1242330
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggatac 653  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| |||    
T  1242480 gcgagcaacagattgtaggtggttgaagttattttttgtggcagcttgtgatgttggttgagggtttttt--atgtatgttgggtgagggttttgggtac 1242383  T
Q  654 aacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattc 706  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  1242382 aacttttgttttcctttgtatgttgctaccttaggaatcctagtctagcattc 1242330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 630 - 710
Target Start/End: Original strand, 3258037 - 3258116
Alignment:
Q  630 atgttgggtgagggttttggatacaacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattccttg 710  Q
    ||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  3258037 atgttggttgatggttttg-atacaacttttattttcctttgtatgttgctacttttggactcctaatctagcattccttg 3258116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 5051441 - 5051306
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||||||||  |||||||||   |||||||||||||||| || |||||||||| ||| |||   |||||||||||||||| ||    
T  5051441 ttttggtggtgtgaggaggtgtcggtgggtcttcaacggttgggttcgatcataaccttctcatccggtttgactactctgttatatggtggtttgttga 5051342  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      ||||||| || | ||||| |||  ||||||||||    
T  5051341 tgtggatcgttggttttgctgctgcaaaggtggatt 5051306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 554 - 614
Target Start/End: Original strand, 3257988 - 3258047
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttga 614  Q
    ||||||||| || |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  3257988 gcgagcagcggaatgtaggtggtggaagttgtttt-tgtggcagcttgtgatgttggttga 3258047  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 36592957 - 36592822
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||| | | ||||  |||||||||   |||||||||||||||| || ||| |||||| | | |||   |||| ||||||||||||||    
T  36592957 ttttggtggtgtgaggaagggccggtgggtcttcaactgttgggttcgatcataaccttctcacccggtttggctactctgttatctggtggtttgtcga 36592858  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||| || ||||  ||||||||||||||    
T  36592857 cgtggatcgatggtggtgctgttgtgaaggtggatt 36592822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 630 - 710
Target Start/End: Complemental strand, 5051069 - 5050990
Alignment:
Q  630 atgttgggtgagggttttggatacaacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattccttg 710  Q
    ||||||||||||||| |||| | |||||||| ||||||||||||||||||||| ||| || || ||| ||| |||||||||    
T  5051069 atgttgggtgagggtgttgg-tgcaacttttgttttcctttgtatgttgctactttacgactcttaacctatcattccttg 5050990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 4e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 554 - 706
Target Start/End: Original strand, 40074611 - 40074761
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggatac 653  Q
    ||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| |||    
T  40074611 gcgagcagcggattgttgttggtggaagttgttttttgtggcagcttgtgatgttggttgagggttttct--atgtatgttgggtgagggttttgggtac 40074708  T
Q  654 aacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattc 706  Q
    || |||| ||||||||| ||||||||||||||| |||||||| |||| |||||    
T  40074709 aatttttgttttcctttatatgttgctaccttacgaatcctagtctaacattc 40074761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 569 - 710
Target Start/End: Original strand, 15121814 - 15121953
Alignment:
Q  569 taggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggatacaacttttattttcct 668  Q
    |||||| | |||||||||||| ||||||  |||||||||||||||||||        ||| || ||||||||||||||||| ||||||||||||||||||    
T  15121814 taggtgttggaagttgtttttggtggcaatttgtgatgttggttgagggttttttt-atgaattttgggtgagggttttgg-tacaacttttattttcct 15121911  T
Q  669 ttgtatgttgctaccttaggaatcctaatctagcattccttg 710  Q
    |||||||||||||||||| || ||||| ||||||||||||||    
T  15121912 ttgtatgttgctaccttacgactcctagtctagcattccttg 15121953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 251 - 378
Target Start/End: Original strand, 40074310 - 40074437
Alignment:
Q  251 gtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcgagatggatc 350  Q
    ||||||||||||||||||  |||| |||  |||||||||||||| ||| || |||||||||||||| ||||  |||| ||||||||||||||| ||||||    
T  40074310 gtgtgaggaggtgtcggtgggtctccaatgactgggttcgatcagaaccttctcatccggttcgactactatgttatctggtggtttgtcgaggtggatc 40074409  T
Q  351 gatgatgttgctactgtgaaggtggatt 378  Q
    |||| ||||||| || ||||||||||||    
T  40074410 gatggtgttgctgctctgaaggtggatt 40074437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 567 - 710
Target Start/End: Complemental strand, 26199368 - 26199228
Alignment:
Q  567 tgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggatacaacttttattttc 666  Q
    |||||||||| |||||||||| | |||||||||||||| |||||||||||         |||||||||||||||||||||||| ||||  ||||||||||    
T  26199368 tgtaggtggtggaagttgtttgt-gtggcagcttgtgacgttggttgagg-ttttttttatgtatgttgggtgagggttttgg-tacagtttttattttc 26199272  T
Q  667 ctttgtatgttgctaccttaggaatcctaatctagcattccttg 710  Q
    |||||||| ||||||| ||| || ||||| ||||||||||||||    
T  26199271 ctttgtatattgctactttacgactcctagtctagcattccttg 26199228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 36934296 - 36934161
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||||||||  |||||||||   |||||||||||| ||| || ||||| |||||||| |||  ||||| |||||||||| |      
T  36934296 ttttggtggtgtgaggaggtgtcggtgggtcttcaacggttgggttcgatcagaaccttctcatctggttcgactactctattatctggtggtttgccag 36934197  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      ||||| |||||||||||| |||||| ||||||||    
T  36934196 tgtggattgatgatgttgctgctgtgatggtggatt 36934161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 626 - 710
Target Start/End: Original strand, 5893329 - 5893412
Alignment:
Q  626 atgtatgttgggtgagggttttggatacaacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattccttg 710  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| || ||||| ||||| ||||||||    
T  5893329 atgtttgttgggtgaggattttgg-tacaacttttattttcctttgtatgttgctactttacgactcctattctagtattccttg 5893412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 554 - 616
Target Start/End: Complemental strand, 47588779 - 47588718
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagg 616  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  47588779 gcgagcagcagaatgtaggtggtggaagttgttttt-gtggcagcttgtgatgttggttgagg 47588718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 26199837 - 26199702
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||| ||| ||||  ||||||||    ||||||||||||  || || ||||| |||||||| |||  ||||| ||||||||||||||    
T  26199837 ttttggtggtgtgaggatgtgacggtgggtcttcaatggttgggttcgatcagtaccttctcatcaggttcgactactctattatttggtggtttgtcga 26199738  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      || ||||||| ||||| |  ||||||||||||||    
T  26199737 tgtgtatcgatggtgttgttgttgtgaaggtggatt 26199702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 554 - 617
Target Start/End: Complemental strand, 36933988 - 36933926
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgaggg 617  Q
    ||||||||  || |||||||||| |||||||||| | |||||||||||||||||||||||||||    
T  36933988 gcgagcagttgaatgtaggtggtggaagttgtttct-gtggcagcttgtgatgttggttgaggg 36933926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 360
Target Start/End: Original strand, 5892950 - 5893067
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||| |||||||||||| ||||||||  |||||||||   ||||||| |||| ||| || |||||||||||||  |||   |||| ||||||||||||||    
T  5892950 tttttgtggtgtgaggaagtgtcggtgggtcttcaacggttgggttcaatcagaaccttctcatccggttcgattactctgttatctggtggtttgtcga 5893049  T
Q  343 gatggatcgatgatgttg 360  Q
      ||||| |||| |||||    
T  5893050 tgtggattgatggtgttg 5893067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 9e-35; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 22696599 - 22696464
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||||||||||||||||||||  |||  |||||||||   |||||||||||||||| ||||||||||||||||| |||  ||||| ||||||||||||||    
T  22696599 ttttggtggtgtgaggaggtgctggtgggtcttcaacggttgggttcgatcataaccttttcatccggttcgactactctattatctggtggtttgtcga 22696500  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
     ||||||||||| ||||||| |||||||||||||||    
T  22696499 tatggatcgatggtgttgctgctgtgaaggtggatt 22696464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 554 - 710
Target Start/End: Complemental strand, 22696296 - 22696141
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagg-gnnnnnnnnatgtatgttgggtgagggttttggata 652  Q
    ||||||| || | |||||||||| ||||||||||||| ||||| |||||||  |||||| ||| |        ||||||| |||||||||||||||| ||    
T  22696296 gcgagcaacaaaatgtaggtggtggaagttgtttttt-tggcaacttgtgacattggttaaggtgtttttttaatgtatggtgggtgagggttttgg-ta 22696199  T
Q  653 caacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattccttg 710  Q
    |||||||| ||||| ||||||||||||||| |||  | || || ||||||||||||||    
T  22696198 caacttttgttttcttttgtatgttgctactttacaactcttagtctagcattccttg 22696141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 612
Target Start/End: Complemental strand, 14287416 - 14287360
Alignment:
Q  556 gagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggtt 612  Q
    ||||||| || |||||||||| ||||||| |||| |||| |||||||||||||||||    
T  14287416 gagcagcggaatgtaggtggtggaagttgattttggtggtagcttgtgatgttggtt 14287360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 709
Target Start/End: Original strand, 34503371 - 34503445
Alignment:
Q  633 ttgggtgagggttttggatacaacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattcctt 709  Q
    |||||||||| |||||| |||||||||| |||||| |||||||||||||| ||| || |||||  ||||||||||||    
T  34503371 ttgggtgagg-ttttgg-tacaacttttgttttccattgtatgttgctactttacgactcctagcctagcattcctt 34503445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 615
Target Start/End: Original strand, 11444808 - 11444855
Alignment:
Q  568 gtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgag 615  Q
    ||||||||| ||||||||||| ||||||| ||||||||||| ||||||    
T  11444808 gtaggtggtggaagttgttttatgtggcaacttgtgatgttagttgag 11444855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 24045613 - 24045688
Alignment:
Q  303 tcatccggttcgaccactacattatatggtggtttgtcgagatggatcgatgatgttgctactgtgaaggtggatt 378  Q
    |||||||||||||| |||   |||| ||||||||||||   ||||||||||||| |||||  ||||||||||||||    
T  24045613 tcatccggttcgactactctgttatctggtggtttgtccgtatggatcgatgatattgctgttgtgaaggtggatt 24045688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 554 - 709
Target Start/End: Complemental strand, 23533101 - 23532946
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggatac 653  Q
    |||||||||| |||||||||||| ||||||||||||||||||| ||| |||||||||||||| |         |||| |||||||||||||||||| |||    
T  23533101 gcgagcagcatattgtaggtggtggaagttgttttttgtggcaacttatgatgttggttgagagttttttttttgtacgttgggtgagggttttgggtac 23533002  T
Q  654 aacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattcctt 709  Q
    || ||||||||||||||||||| | |||| | | ||||| ||||||||||||||||    
T  23533001 aaattttattttcctttgtatgatactacttaacgaatcataatctagcattcctt 23532946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 554 - 705
Target Start/End: Complemental strand, 50589324 - 50589172
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagg-gnnnnnnnnatgtatgttgggtgagggttttggata 652  Q
    ||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||| ||    
T  50589324 gcgagcagcggattgtgggtggtggaagttgttttttgtggcagcttgtgatgttggttgaggtttttcttttatgtatgttgggtgagggttttgggta 50589225  T
Q  653 caacttttattttcctttgtatgttgctaccttaggaatcctaatctagcatt 705  Q
    ||| ||||||||| | ||||| |||||||| | | |||||||| |||||||||    
T  50589224 caaattttatttttccttgtacgttgctacttaacgaatcctagtctagcatt 50589172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 568 - 709
Target Start/End: Complemental strand, 8817330 - 8817187
Alignment:
Q  568 gtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnat--gtatgttgggtgagggttttggatacaacttttatttt 665  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||||||||         |  |||| ||||||||||||||||| |||||||||||||||    
T  8817330 gtaggtggtggaaattgttttttatggcagcttgtgatgttggttgagggttttatttttttgtattttgggtgagggttttgggtacaacttttatttt 8817231  T
Q  666 cctttgtatgttgctaccttaggaatcctaatctagcattcctt 709  Q
    ||||||||||||||||  ||| || ||||| |||| ||||||||    
T  8817230 cctttgtatgttgctattttacgactcctagtctaacattcctt 8817187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 243 - 374
Target Start/End: Complemental strand, 14792289 - 14792158
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||||||||||||||| |||||||||  |||||||||   ||||||||||||||||  | |||||||||||||| |||   |||| |||||| |||||||    
T  14792289 ttttggtggtgtgaggcggtgtcggtgggtcttcaacggttgggttcgatcataactatctcatccggttcgactactctgttatctggtgggttgtcga 14792190  T
Q  343 gatggatcgatgatgttgctactgtgaaggtg 374  Q
      |||||||||| ||||||| |||||||||||    
T  14792189 tgtggatcgatggtgttgctgctgtgaaggtg 14792158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 374
Target Start/End: Complemental strand, 12888298 - 12888167
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||||||||  |||||||||   |||||||||||| | | || ||||||| |||||| |||   |||| ||||||||||||||    
T  12888298 ttttggtggtgtgaggaggtgtcggtgggtcttcaacggttgggttcgatcagatccttctcatccgattcgactactctgttatctggtggtttgtcga 12888199  T
Q  343 gatggatcgatgatgttgctactgtgaaggtg 374  Q
      |||||||||| |||||||  ||||||||||    
T  12888198 tgtggatcgatggtgttgctgttgtgaaggtg 12888167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 18357148 - 18357013
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||| ||||  |||||||||   |||||||||||| ||  || |||||||||||||| |||   |||||| ||| ||||||||    
T  18357148 ttttggtggtgtgaggaggtgacggtgggtcttcaacggttgggttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcga 18357049  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||||||| ||| | |||||||||||||    
T  18357048 tgtggatcgatgatgtggctgccgtgaaggtggatt 18357013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 378
Target Start/End: Original strand, 18431659 - 18431794
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||| ||||  |||||||||   |||||||||||| ||  || |||||||||||||| |||   |||||| ||| ||||||||    
T  18431659 ttttggtggtgtgaggaggtgacggtgggtcttcaacggttgggttcgatcagaatcttctcatccggttcgactactctgttatatagtgttttgtcga 18431758  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||||||| ||| | |||||||||||||    
T  18431759 tgtggatcgatgatgtggctgccgtgaaggtggatt 18431794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 554 - 668
Target Start/End: Complemental strand, 14791988 - 14791877
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggatac 653  Q
    ||||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||||||        ||||||||||||||| |||||||| |||    
T  14791988 gcgagcagcggaatgtaggtggtggaagttgttttt-gtggcagcttgtgatgttggttgaggg-gttttttatgtatgttgggtgaaggttttgg-tac 14791892  T
Q  654 aacttttattttcct 668  Q
    ||||||| |||||||    
T  14791891 aacttttgttttcct 14791877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 554 - 617
Target Start/End: Original strand, 28149615 - 28149678
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgaggg 617  Q
    ||||||| | ||||||||||||| |||||||||||||||| |||||||||||||||| ||||||    
T  28149615 gcgagcaactgattgtaggtggtggaagttgttttttgtgacagcttgtgatgttgggtgaggg 28149678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 557 - 709
Target Start/End: Original strand, 51407668 - 51407824
Alignment:
Q  557 agcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnat----gtatgttgggtgagggttttggata 652  Q
    |||||| ||| |||||||||  || ||||||||| ||||| ||||||||||||||||||||         |    |||| ||||||||||||||| | ||    
T  51407668 agcagcggatcgtaggtggtgaaaattgttttttatggcaacttgtgatgttggttgagggttttatttttttttgtattttgggtgagggttttaggta 51407767  T
Q  653 caacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattcctt 709  Q
     |||||||||||| |||||||||||||||  ||| || ||||| |||||||||||||    
T  51407768 taacttttatttttctttgtatgttgctattttacgactcctagtctagcattcctt 51407824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 630 - 680
Target Start/End: Original strand, 28149665 - 28149715
Alignment:
Q  630 atgttgggtgagggttttggatacaacttttattttcctttgtatgttgct 680  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  28149665 atgttgggtgagggttttgggtacaacttttgttttcctttgtatgttgct 28149715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 378
Target Start/End: Original strand, 51407335 - 51407468
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||| | ||  |||||||||   |||||||||||| ||| || |||||| ||| ||| |||   |||| || |||||||||||    
T  51407335 ttttggtggtgtgaggaggtgccagtgggtcttcaacggttgggttcgatcagaaccttctcatccagttggactact--gttatctgatggtttgtcga 51407432  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||| |||||||  |||||| |||||||    
T  51407433 agtggatcgatggtgttgctgttgtgaaagtggatt 51407468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 378
Target Start/End: Complemental strand, 3915368 - 3915235
Alignment:
Q  245 ttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcgaga 344  Q
    ||||||||||||||||||||| |||  || ||| |   |||||||||| | ||| || ||||| |||||||| | |   |||| ||||||||| ||||      
T  3915368 ttggtggtgtgaggaggtgtcagttgatcctcagcggttgggttcgattagaaccttctcatctggttcgactattctgttatctggtggtttatcgacg 3915269  T
Q  345 tggatcgatgatgttgctactgtgaaggtggatt 378  Q
    |||||||||| ||||||| || ||||||||||||    
T  3915268 tggatcgatggtgttgctgctatgaaggtggatt 3915235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 710
Target Start/End: Complemental strand, 12887954 - 12887878
Alignment:
Q  633 ttgggtgagggttttggatacaacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattccttg 710  Q
    |||||||| |||||||| |||||||||| ||||||||| ||||||||||| ||| ||  |||| |||| |||||||||    
T  12887954 ttgggtgaaggttttgg-tacaacttttgttttcctttatatgttgctactttacgacccctagtctaccattccttg 12887878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 708
Target Start/End: Complemental strand, 55728235 - 55728190
Alignment:
Q  663 tttcctttgtatgttgctaccttaggaatcctaatctagcattcct 708  Q
    |||||||||||||||||||| |||  | ||||||||||||||||||    
T  55728235 tttcctttgtatgttgctactttaatattcctaatctagcattcct 55728190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 554 - 710
Target Start/End: Original strand, 51057145 - 51057305
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttgg---- 649  Q
    ||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||| ||        ||||||||||||||||||||||||        
T  51057145 gcgagcagcagattgcaggtggtggaaattgttttttgtggtagcttgtgatgttggttgatggttttttttatgtatgttgggtgagggttttgggcac 51057244  T
Q  650 atacaacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattccttg 710  Q
     |||||||||| |||| |||||||||||||||||||  |||||||| |||| |||||||||    
T  51057245 gtacaacttttgtttttctttgtatgttgctacctttcgaatcctagtctaacattccttg 51057305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 25498893 - 25498758
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||| |||||||||||||||||||||  |||||||||   ||| |||||||| ||| ||||||||||||||||| |||  ||||| | ||||||||||||    
T  25498893 tttttgtggtgtgaggaggtgtcggtgggtcttcaacggttggtttcgatcagaaccttttcatccggttcgactactctattatctagtggtttgtcga 25498794  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      ||||| ||||||||||||  ||||||||||||||    
T  25498793 tgtggattgatgatgttgctgttgtgaaggtggatt 25498758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 554 - 695
Target Start/End: Complemental strand, 25498590 - 25498448
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnn---atgtatgttgggtgagggttttgga 650  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||||||  |||||| |||            || ||||||| || ||||||||||     
T  25498590 gcgagcagcagaatgtaggtggtggaagttgttttt-gtggcagcttgtgacattggttaaggtttttttcttttatatatgttgagtaagggttttgg- 25498493  T
Q  651 tacaacttttattttcctttgtatgttgctaccttaggaatccta 695  Q
    |||||||||||||||||||||||||||||||| ||| || |||||    
T  25498492 tacaacttttattttcctttgtatgttgctactttatgactccta 25498448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 378
Target Start/End: Original strand, 51056834 - 51056968
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||||||||||||||||||||| |||  |||||||||   || ||||||||||||| || ||| ||| || ||  ||||  |||| ||||||||||||||    
T  51056834 ttttggtggtgtgaggaggtgttggtg-gtcttcaacggttgagttcgatcataaccttctcacccgatttgattactatgttatctggtggtttgtcga 51056932  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||| |||||| || | |||||||||||||    
T  51056933 tgtggatcgacgatgttactgcagtgaaggtggatt 51056968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 629 - 682
Target Start/End: Original strand, 17114057 - 17114109
Alignment:
Q  629 tatgttgggtgagggttttggatacaacttttattttcctttgtatgttgctac 682  Q
    |||||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  17114057 tatgttgggtgagggttttggg-acaacttttgttttcctttgtatgttgctac 17114109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 378
Target Start/End: Complemental strand, 38258839 - 38258744
Alignment:
Q  283 tgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcgagatggatcgatgatgttgctactgtgaaggtggatt 378  Q
    |||||||||||| ||| || |||||||||||||| ||   ||||| |||||||||||| |  ||| |||||| ||||| | || ||||||||||||    
T  38258839 tgggttcgatcagaaccttctcatccggttcgactaccctattatctggtggtttgtctatgtgggtcgatggtgttgatgctatgaaggtggatt 38258744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 49358632 - 49358497
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||| ||||||| || ||||||||||  |||||||| |  |||||||||||| ||| || || || | |||||| |||   |||| |||||| |||||||    
T  49358632 tttttgtggtgttagaaggtgtcggtgggtcttcaatagttgggttcgatcagaaccttctcgtctgattcgactactctgttatctggtggattgtcga 49358533  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
     |||||| |||| |||||||  || |||||||||||    
T  49358532 tatggattgatggtgttgctgatgcgaaggtggatt 49358497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 554 - 616
Target Start/End: Original strand, 17113980 - 17114041
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagg 616  Q
    ||||||||| || ||||||| || ||||||| |||| |||||||||||||| |||||||||||    
T  17113980 gcgagcagcggaatgtaggtagtggaagttgctttt-gtggcagcttgtgacgttggttgagg 17114041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 554 - 710
Target Start/End: Complemental strand, 19554788 - 19554636
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggatac 653  Q
    ||||||| | || |||| ||||| |||||| ||||||||||||||||||||||||||||||||         ||||| ||| |||||||||||||| |||    
T  19554788 gcgagcaccggaatgtaagtggtggaagtttttttttgtggcagcttgtgatgttggttgagg---ttttttatgtacgtttggtgagggttttgg-tac 19554693  T
Q  654 aacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattccttg 710  Q
    ||||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||    
T  19554692 aacttttattttcctttgtatgttgctactttacgactcctaatctagcatttcttg 19554636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 568 - 705
Target Start/End: Original strand, 19411660 - 19411793
Alignment:
Q  568 gtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggatacaacttttattttcc 667  Q
    ||||||||| |||||| ||||| |||||||||||||| ||||||||||          ||||| ||| ||| |||||||||| |||||||||||||||||    
T  19411660 gtaggtggtggaagttttttttggtggcagcttgtgacgttggttgag---attttttatgtacgtttggtcagggttttgg-tacaacttttattttcc 19411755  T
Q  668 tttgtatgttgctaccttaggaatcctaatctagcatt 705  Q
    ||||||||||||||| ||| || ||||| |||||||||    
T  19411756 tttgtatgttgctactttacgactcctagtctagcatt 19411793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 243 - 378
Target Start/End: Original strand, 38149525 - 38149660
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||| | | ||||| ||||||||     ||||||||||| ||| || ||| ||||||||   |||   |||| ||||||||||||||    
T  38149525 ttttggtggtgtgaggaagggccggttggtcttcaattgtcgggttcgatcagaaccttctcacccggttcgggtactctgttatttggtggtttgtcga 38149624  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||| || |||| |||||||||||||||    
T  38149625 cgtggatcgatggtggtgctgctgtgaaggtggatt 38149660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 680
Target Start/End: Original strand, 5324219 - 5324264
Alignment:
Q  634 tgggtgagggttttggatacaacttttattttcctttgtatgttgct 680  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||    
T  5324219 tgggtgagggttttag-tacaacttttattttcctttgtatgttgct 5324264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 710
Target Start/End: Complemental strand, 20516370 - 20516294
Alignment:
Q  633 ttgggtgagggttttggatacaacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattccttg 710  Q
    ||||| ||||||||||| |||||||||| ||||| |||||||||||||||  || || || || ||||||||||||||    
T  20516370 ttgggggagggttttgg-tacaacttttgttttcgtttgtatgttgctactctacgactcttagtctagcattccttg 20516294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 337
Target Start/End: Complemental strand, 20519070 - 20518976
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggttt 337  Q
    ||||||||||||||||| | |  |||  |||||||||   |||||||||||| |||||| |||||||||||||| |||   |||| |||||||||    
T  20519070 ttttggtggtgtgaggaagggctggtgggtcttcaacggttgggttcgatcagaacattctcatccggttcgactactcttttatctggtggttt 20518976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 32919597 - 32919651
Alignment:
Q  324 ttatatggtggtttgtcgagatggatcgatgatgttgctactgtgaaggtggatt 378  Q
    |||| ||||||||||||||  |||||||||| || |||| |||||||||||||||    
T  32919597 ttatctggtggtttgtcgacgtggatcgatggtggtgctgctgtgaaggtggatt 32919651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 245 - 378
Target Start/End: Complemental strand, 27109901 - 27109768
Alignment:
Q  245 ttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcgaga 344  Q
    ||||||||||||||||||| ||||  |||||||||   | |||||||||| |||||| |||||||||||||| |||   |||| ||||||||||||||      
T  27109901 ttggtggtgtgaggaggtgccggtgggtcttcaacggtttggttcgatcagaacattctcatccggttcgactactctgttatctggtggtttgtcgatg 27109802  T
Q  345 tggatcgatgatgttgctactgtgaaggtggatt 378  Q
    |||||||||| ||||||| |||||||||||||||    
T  27109801 tggatcgatggtgttgctgctgtgaaggtggatt 27109768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 554 - 709
Target Start/End: Original strand, 32947238 - 32947391
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggatac 653  Q
    ||||||||| |  ||||| |||| |||||||||||| || ||||||||||| ||||||||||||        ||||||||| ||||| ||||||  ||||    
T  32947238 gcgagcagcgggatgtagatggtggaagttgttttt-gtagcagcttgtgacgttggttgagggttttctttatgtatgttaggtgaaggtttta-atac 32947335  T
Q  654 aacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattcctt 709  Q
    ||||||||||||||||||||||||||||| ||| || |||||||||||| ||||||    
T  32947336 aacttttattttcctttgtatgttgctactttacgactcctaatctagccttcctt 32947391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 564 - 676
Target Start/End: Complemental strand, 27109585 - 27109476
Alignment:
Q  564 gattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggatacaacttttatt 663  Q
    ||||||||||||| ||||||||||||| || || ||||||||| ||||||||||        ||||||||||||||||| ||||||||||||||||| ||    
T  27109585 gattgtaggtggtggaagttgttttttatgacaacttgtgatgatggttgagggttttt---atgtatgttgggtgaggattttggatacaacttttgtt 27109489  T
Q  664 ttcctttgtatgt 676  Q
    |||||||||||||    
T  27109488 ttcctttgtatgt 27109476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 626 - 710
Target Start/End: Complemental strand, 39629315 - 39629232
Alignment:
Q  626 atgtatgttgggtgagggttttggatacaacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattccttg 710  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| || | || |||||||||||||||    
T  39629315 atgtatgttgggtgagggttttgg-tacaacttttattttcttttgtatgttgctactttacgacttctgatctagcattccttg 39629232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 32946941 - 32947014
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgac 316  Q
    |||||||||||||||||||||||| |  |||||||||   |||||||||||| ||| || ||||||||||||||    
T  32946941 ttttggtggtgtgaggaggtgtcgatgggtcttcaacggttgggttcgatcagaaccttctcatccggttcgac 32947014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 662 - 710
Target Start/End: Original strand, 14351756 - 14351804
Alignment:
Q  662 ttttcctttgtatgttgctaccttaggaatcctaatctagcattccttg 710  Q
    ||||||||||||||||||||| ||| || ||||| ||||||||||||||    
T  14351756 ttttcctttgtatgttgctactttaagattcctagtctagcattccttg 14351804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 243 - 374
Target Start/End: Original strand, 47442 - 47573
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||||||||||||||| |||||||||  |||||||||   ||||||||||||||||  | |||||||||||||| |||   |||| |||||| |||||||    
T  47442 ttttggtggtgtgaggcggtgtcggtgggtcttcaacggttgggttcgatcataactatctcatccggttcgactactctgttatctggtgggttgtcga 47541  T
Q  343 gatggatcgatgatgttgctactgtgaaggtg 374  Q
      |||||||||| ||||||| |||||||||||    
T  47542 tgtggatcgatggtgttgctgctgtgaaggtg 47573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 554 - 668
Target Start/End: Original strand, 47743 - 47854
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggatac 653  Q
    ||||||||| || |||||||||| ||||||||||| ||||||||||||||||||||||||||||        ||||||||||||||| |||||||| |||    
T  47743 gcgagcagcggaatgtaggtggtggaagttgtttt-tgtggcagcttgtgatgttggttgaggg-gttttttatgtatgttgggtgaaggttttgg-tac 47839  T
Q  654 aacttttattttcct 668  Q
    ||||||| |||||||    
T  47840 aacttttgttttcct 47854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 554 - 709
Target Start/End: Original strand, 27632533 - 27632686
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggatac 653  Q
    |||||||||||  |||||||||| |||||  ||||| ||||||||||||||  |||||||||||        |||||| |||||||||| ||||| ||||    
T  27632533 gcgagcagcaggatgtaggtggtggaagtaattttt-gtggcagcttgtgacattggttgagggttttttttatgtatcttgggtgaggattttg-atac 27632630  T
Q  654 aacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattcctt 709  Q
    ||||||| ||||||||||||||||||||| ||| || || |||| ||| |||||||    
T  27632631 aacttttgttttcctttgtatgttgctactttacgattcataatttagtattcctt 27632686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 559 - 677
Target Start/End: Complemental strand, 33757879 - 33757758
Alignment:
Q  559 cagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnnat---gtatgttgggtgagggttttggatacaa 655  Q
    |||| ||| ||||||||| ||| ||||||||| || |||||||||||||||||||||||         |   |||| ||||||||||||||||| |||||    
T  33757879 cagcggatcgtaggtggtggaaattgttttttatgacagcttgtgatgttggttgagggttttaatttttttgtattttgggtgagggttttgggtacaa 33757780  T
Q  656 cttttattttcctttgtatgtt 677  Q
    ||||||||||||||||||||||    
T  33757779 cttttattttcctttgtatgtt 33757758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 33758221 - 33758088
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    ||||||||||||||||||||| ||||  |||||||||   |||||||||||| ||| || |||||| ||||||| |||   |||| || |||||||||||    
T  33758221 ttttggtggtgtgaggaggtgccggtgggtcttcaacggttgggttcgatcagaaccttctcatccagttcgactact--gttatctgatggtttgtcga 33758124  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||| ||||||   ||||| ||||||||    
T  33758123 tgtggatcgatggtgttgccgttgtgatggtggatt 33758088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 243 - 378
Target Start/End: Complemental strand, 9436472 - 9436337
Alignment:
Q  243 ttttggtggtgtgaggaggtgtcggtttgtcttcaacaactgggttcgatcataacattttcatccggttcgaccactacattatatggtggtttgtcga 342  Q
    |||| |||||||||||||||||||||  |||||||||  ||| |||| |||| ||| || ||||| |||||||  |||   |||| | ||||||||||||    
T  9436472 tttttgtggtgtgaggaggtgtcggtgggtcttcaacggctgagttcaatcaaaaccttctcatctggttcgattactctgttatctagtggtttgtcga 9436373  T
Q  343 gatggatcgatgatgttgctactgtgaaggtggatt 378  Q
      |||||||||| ||||| |  | ||||||||||||    
T  9436372 tgtggatcgatggtgttgatggtttgaaggtggatt 9436337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 554 - 709
Target Start/End: Complemental strand, 9436182 - 9436027
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgttttttgtggcagcttgtgatgttggttgagggnnnnnnnn--atgtatgttgggtgagggttttggat 651  Q
    ||||||||| || | ||||||| |||| ||||||||  ||||||||||||||||||||||| ||          ||||||||| | |||||||||||  |    
T  9436182 gcgagcagcggaatataggtgggtgaa-ttgtttttgttggcagcttgtgatgttggttgaaggttttttttttatgtatgttagttgagggttttgt-t 9436085  T
Q  652 acaacttttattttcctttgtatgttgctaccttaggaatcctaatctagcattcctt 709  Q
    ||||||||| |||| |||| ||||||||||| ||| || ||||||| || ||||||||    
T  9436084 acaacttttgtttttctttatatgttgctactttacgactcctaatataacattcctt 9436027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 554 - 682
Target Start/End: Original strand, 79531 - 79658
Alignment:
Q  554 gcgagcagcagattgtaggtggttgaagttgtttt-ttgtggcagcttgtgatgttggttgagggnnnnnnnnatgtatgttgggtgagggttttggata 652  Q
    ||||||||| |||| |||| ||| ||||||||||| |||||||||||||||||| ||||||| ||        ||||| ||||||||||| |||||  ||    
T  79531 gcgagcagcggattataggcggtggaagttgtttttttgtggcagcttgtgatgctggttgatgg-tttttttatgta-gttgggtgaggattttgagta 79628  T
Q  653 caacttttattttcctttgtatgttgctac 682  Q
    ||| |||| |||||||||||||||||||||    
T  79629 caaattttgttttcctttgtatgttgctac 79658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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