View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7506_high_4 (Length: 537)
Name: NF7506_high_4
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 8798020 - 8797668
Alignment:
| Q |
1 |
actaacgtcgaagaaatcaagtcctccggaaccgttgagtgtgaattctgctaatgttgccggtggtatagcgtttcttccggcacattcgatggtggag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798020 |
actaacgtcgaagaaatcaagtcctccggaaccgttgagtgtgaattctgctaatgttgccggtggtatagcgtttcttccggcacattcgatggtggag |
8797921 |
T |
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| Q |
101 |
gaatcacagtcgccggtgatgcatgagaattttccagtggggtcttgggagcagagtgttcgtccccatagacggccggaccatgatggtggtacagcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8797920 |
gaatcacagtcgccggtgatgcatgagaattttccagtggggtcttgggagcagagtgttcgtccccatacacggccggaccatgatggtggtacagcga |
8797821 |
T |
|
| Q |
201 |
gagcattggactcgcctggttggagaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactgtgtaaccgcaatt |
300 |
Q |
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| T |
8797820 |
gagcattggactcgcctggttggagaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactgtgtaaccgcaatt |
8797721 |
T |
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| Q |
301 |
gtttacaattgtgaatgttgttgaatatgaacctgtaataataacatgttgaa |
353 |
Q |
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| T |
8797720 |
gttcacaattgtgaatgttgttgaatatgaacctgtaataataacatgttgaa |
8797668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 426 - 517
Target Start/End: Complemental strand, 8797598 - 8797507
Alignment:
| Q |
426 |
ctaaactgcatgtttggcatcaatgttagattttttagaattacaatagatcagatgattctgacatactcatcgtgaatgataaatcaaaa |
517 |
Q |
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| T |
8797598 |
ctaaactgcatgtttggcatcaatgttagattttttagaattacaatagattacatgattctgacatactcattgtaaatgagaaatcaaaa |
8797507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 18954569 - 18954904
Alignment:
| Q |
1 |
actaacgtcgaagaaatcaagtcctccggaaccgttgagtgtgaattctgctaatgttgccggtggtatagcgtttcttccggcacattcgatggtggag |
100 |
Q |
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|||||||||||||||||||||||| || | ||||| ||||| || |||||||||||||| || ||| |||||||| ||| ||||||| ||||||||| |
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| T |
18954569 |
actaacgtcgaagaaatcaagtccacctgcgccgttaagtgtaaactctgctaatgttgctggcggttgagcgtttcctccaacacattctatggtggag |
18954668 |
T |
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| Q |
101 |
gaatcacagtcgccggtgatgcatgagaattttccagtggggtcttgggagcagagtgttcgtccccatagacggccggaccatgatggtggtacagcga |
200 |
Q |
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| T |
18954669 |
gaagcacagtcgccagtaacacatgagaattttccggtggaatcttgagagcatagggttcggccccatagacggccggaccacttggggggtacggcga |
18954768 |
T |
|
| Q |
201 |
gagcattggactcgcctggttggagaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactgtgtaaccgcaatt |
300 |
Q |
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| | || |||||||| ||||| ||| | ||||||||||||||||| ||| ||| |||| |||||||||||||| |||||||||||||| || || |
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| T |
18954769 |
gggtgttcgactcgccgggttgaagagcaaagccggtggtggagaagggtgttgtgtcggcaccggataaaattcctggccaaactgtgtatttacagtt |
18954868 |
T |
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| Q |
301 |
gtttacaattgtgaatgttgttgaatatgaacctgt |
336 |
Q |
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||| |||||||||||||||| ||||| |||||||| |
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| T |
18954869 |
gttagcaattgtgaatgttgtggaataagaacctgt |
18954904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 14039598 - 14039928
Alignment:
| Q |
1 |
actaacgtcgaagaaatcaagtcctccggaaccgttgagtgtgaattctgctaatgttgccggtggtatagcgtttcttccggcacattcgatggtggag |
100 |
Q |
| |
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|||||||||||||||||||||||| | |||||| ||||| || || |||||||| || || ||| |||||||| ||| |||||| |||| ||| |
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| T |
14039598 |
actaacgtcgaagaaatcaagtccgtttgcaccgttaagtgtaaactcggctaatgtagctggcggttgagcgtttcctccattacattctatggacgag |
14039697 |
T |
|
| Q |
101 |
gaatcacagtcgccggtgatgcatgagaattttccagtggggtcttgggagcagagtgttcgtccccatagacggccggaccatgatggtggtacagcga |
200 |
Q |
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||| ||||||| ||||| | |||||||||||||| |||| ||||| |||||||| || ||||||||||||||||| ||||| || ||||| || | |
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| T |
14039698 |
gaagcacagtcaccggtaacacatgagaattttccggtggaatcttgagagcagagggtacgtccccatagacggcctgaccacttggggggtacggcta |
14039797 |
T |
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| Q |
201 |
gagcattggactcgcctggttggagaacgaagccggtggtggagaacggttctgtcccggcgccggataaaattcccggccaaactgtgtaaccgcaatt |
300 |
Q |
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| T |
14039798 |
gggcattggattcgccgggttggagagcaaaaccggttgtagagaatggtgttgttcctgcgccggataaaattccaggccaaacagtgtagttgcactt |
14039897 |
T |
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| Q |
301 |
gtttacaattgtgaatgttgttgaatatgaa |
331 |
Q |
| |
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||| ||||||||||||||||||| ||||||| |
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| T |
14039898 |
gttaacaattgtgaatgttgttgcatatgaa |
14039928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 31945432 - 31945513
Alignment:
| Q |
107 |
cagtcgccggtgatgcatgagaattttccagtggggtcttgggagcagagtgttcgtccccatagacggccggaccatgatg |
188 |
Q |
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||||| || |||||||||||||||||||| | |||||| ||||| |||||||| ||||||| ||||||||||| |||| |
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| T |
31945432 |
cagtctccagtgatgcatgagaattttccggaggggtcggttgagcatagtgttcggccccatatgcggccggaccaagatg |
31945513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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