View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7506_low_10 (Length: 459)
Name: NF7506_low_10
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 40118648 - 40118343
Alignment:
| Q |
16 |
ataaaccaaatgttccacaactcccaattctttccgcaatccatataaataaccactactgatcaacctactataccttttattaatacaagacagtgac |
115 |
Q |
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| T |
40118648 |
ataaaccaaatgttccacaactcccaattctttccgcaatccatataaataaccactactgatcaacctactataccttttattaatacaagacagcgac |
40118549 |
T |
|
| Q |
116 |
gcgtgattggatcttccaacccaagcgagacaattgagcgccacatcatcgatcagaccagggagaagcgaatcatttggtctatgtctaggaaaaccat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40118548 |
gcgtgattggatcttccaacccaagcgagacaattgagcgcaacatcatcgatcagaccagggagaagcgaatcatttggtctatgtctaggaaaaccat |
40118449 |
T |
|
| Q |
216 |
cattcactccttccctctgatccattttaagaaaactattcactttctactcatcatcctgcaaacaacaatccaaaacacaattcctttatcatctcaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40118448 |
cattcactccttccctctgatccattttaagaaaactattcactttctactcatcatcctgcaaacaacaatccaaaacacaattcctttatcatctcaa |
40118349 |
T |
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| Q |
316 |
ggaatc |
321 |
Q |
| |
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|||||| |
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| T |
40118348 |
ggaatc |
40118343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 390 - 442
Target Start/End: Complemental strand, 40118274 - 40118222
Alignment:
| Q |
390 |
ccttttttatccaattaattaaatctatatcagcatgcaagcagtatctatat |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40118274 |
ccttttttatccaattaattaaatctatatcagcatgcaagcagtatctatat |
40118222 |
T |
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