View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7506_low_11 (Length: 422)
Name: NF7506_low_11
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_low_11 |
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| [»] scaffold0247 (1 HSPs) |
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| [»] scaffold0193 (2 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0247 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 20177 - 19786
Alignment:
| Q |
16 |
atccatttgggttatgaatactcctattagttttcaatttttatttcgattgtttgtgatataagcatacctctagcaaatgatttgtatnnnnnnnnnn |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
20177 |
atccatttgggttatgaatactcctattagttttcaatttttatttggattgtttgtgatataagcttacctctagcaaaagatttgtataaaaaaaata |
20078 |
T |
|
| Q |
116 |
nnn-ttgttattgtatttaggaaaaacaattatgcatcgttattttacatttgttgtctctattgttgtttaattattttaactaattataagccaaata |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20077 |
aaaattgttattgtatttaggaaaaacaattatgcatcgttattttacatttgttttctctattgttgtttaattattttaactaattataagccaaata |
19978 |
T |
|
| Q |
215 |
cgtagtagaataaggaacattctttatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19977 |
cgtagtagaataaggaacattctttatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtct |
19878 |
T |
|
| Q |
315 |
tcttcatatgtccatgcaccttttctaacgccgcttgtattcgccatacaaacctttccttaactgttcatacacaaatataggcatgaatg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19877 |
tcttcatatgtccatgcaccttttctaacgccgcttgtattcgccatacaaacctttccttaactgttcatacacaaatataggcatgaatg |
19786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 153 - 364
Target Start/End: Complemental strand, 23486 - 23276
Alignment:
| Q |
153 |
gttattttacatttgttgtctctattgttgtttaattattttaactaattataagccaaatacgtagtagaataaggaacattctttatacctgttcttt |
252 |
Q |
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||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23486 |
gttattttacatttgtt-tctatataattgtttaattattttaactaattataagccaaatacgtagtagaataaggaacattcgttatacctgttcttt |
23388 |
T |
|
| Q |
253 |
caggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcaccttttctaacgccgcttgt |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23387 |
caggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcaccttttctaacgccgctcgt |
23288 |
T |
|
| Q |
353 |
attcgccataca |
364 |
Q |
| |
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|||||||||||| |
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| T |
23287 |
attcgccataca |
23276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 23590 - 23557
Alignment:
| Q |
16 |
atccatttgggttatgaatactcctattagtttt |
49 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
23590 |
atccatttgggttatgaatactcctattagtttt |
23557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 212 - 340
Target Start/End: Original strand, 33823114 - 33823242
Alignment:
| Q |
212 |
atacgtagtagaataaggaacattctttatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttg |
311 |
Q |
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||||||||||| | ||| || |||| ||||||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||||| ||||| |
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| T |
33823114 |
atacgtagtagcacaagcaatattcattatacctgttcttttgggaattaaatgccattttccttcaccatacttgtgaatgtaagccttgagtaagttg |
33823213 |
T |
|
| Q |
312 |
tcttcttcatatgtccatgcaccttttct |
340 |
Q |
| |
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||||| ||||||||||||||||||||||| |
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| T |
33823214 |
tcttcctcatatgtccatgcaccttttct |
33823242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 33750144 - 33750264
Alignment:
| Q |
208 |
ccaaatacgtagtagaataaggaacattctttatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagaca |
307 |
Q |
| |
|
||||||||| ||||||| ||| ||||||| |||||||| ||||| |||||||||||||||||||||| |||||| |||| ||| ||||| ||||| | |
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| T |
33750144 |
ccaaatacgcagtagaaaaagcaacattcactatacctgctcttttaggaattaaatgccattttccttcaccatacttgttaatataagctttgagtaa |
33750243 |
T |
|
| Q |
308 |
gttgtcttcttcatatgtcca |
328 |
Q |
| |
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|||||||| ||| ||||||| |
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| T |
33750244 |
cttgtcttcctcagatgtcca |
33750264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 33698918 - 33699018
Alignment:
| Q |
240 |
atacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcaccttttc |
339 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||| |||||| |||| | ||| |||||||||| || ||||| |||||||||||||||||||||| |
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| T |
33698918 |
atacctgttcgtttaggaactaaatgccattttccttcaccatacttgtggatgcaagccttgagtagattatcttcctcatatgtccatgcaccttttc |
33699017 |
T |
|
| Q |
340 |
t |
340 |
Q |
| |
|
| |
|
|
| T |
33699018 |
t |
33699018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 346
Target Start/End: Original strand, 33904840 - 33904954
Alignment:
| Q |
232 |
cattctttatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgc |
331 |
Q |
| |
|
||||| ||||||||| ||||| |||| |||||||||||||||| |||||| ||| | || |||||||||| |||||||| |||||||||||||| |
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| T |
33904840 |
cattcattatacctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgc |
33904939 |
T |
|
| Q |
332 |
accttttctaacgcc |
346 |
Q |
| |
|
||||||||| ||||| |
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|
| T |
33904940 |
accttttctcacgcc |
33904954 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 340
Target Start/End: Original strand, 33867254 - 33867404
Alignment:
| Q |
192 |
tttaactaattataagccaaatacgtagtagaataaggaacattctttata--cctgttctttcaggaattaaatgccattttcctacaccatgcttgag |
289 |
Q |
| |
|
||||| |||| |||||||||||| |||| |||||| ||| ||| ||||| |||| ||||| |||| |||||||||||||||| |||||| ||| | |
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|
| T |
33867254 |
tttaattaatcataagccaaatatacagtacaataagcaactttcattatatacctgctctttgtggaactaaatgccattttccttcaccatacttctg |
33867353 |
T |
|
| Q |
290 |
aatgtaagccttgagacagttgtcttcttcatatgtccatgcaccttttct |
340 |
Q |
| |
|
|| |||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
33867354 |
catacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttct |
33867404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 340
Target Start/End: Original strand, 33736435 - 33736536
Alignment:
| Q |
239 |
tatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcacctttt |
338 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||||| |||||| ||| | || |||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
33736435 |
tatacctgctctttgagaaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcacctttt |
33736534 |
T |
|
| Q |
339 |
ct |
340 |
Q |
| |
|
|| |
|
|
| T |
33736535 |
ct |
33736536 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 33763685 - 33763801
Alignment:
| Q |
220 |
tagaataaggaacattcttta-tacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttctt |
318 |
Q |
| |
|
||||||||| ||||||| ||| |||||| ||| | |||| ||||||||||||||| |||||| |||| |||| |||||||||| || ||||| | |
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|
| T |
33763685 |
tagaataagcaacattcgttaatacctgctctctgtggaacaaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcct |
33763784 |
T |
|
| Q |
319 |
catatgtccatgcacct |
335 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
33763785 |
catatgtccaggcacct |
33763801 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 338
Target Start/End: Complemental strand, 5468629 - 5468533
Alignment:
| Q |
242 |
acctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcacctttt |
338 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||| || |||||||||||||||||| |
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|
| T |
5468629 |
acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagttgtcttcctcgtatgtccatgcacctttt |
5468533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 346
Target Start/End: Original strand, 149230 - 149356
Alignment:
| Q |
220 |
tagaataaggaacattctttatacctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttc |
319 |
Q |
| |
|
|||||||| ||||||| || |||||| ||||| ||||| |||||||||||||||| | |||| |||| |||| |||||||||| || ||||| || |
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|
| T |
149230 |
tagaataaataacattcattttacctgctctttgaggaactaaatgccattttccttccccatacttgtcaatgcaagccttgagtagcttatcttcctc |
149329 |
T |
|
| Q |
320 |
atatgtccatgcaccttttctaacgcc |
346 |
Q |
| |
|
|||||||| ||||||||||| ||||| |
|
|
| T |
149330 |
gtatgtccaggcaccttttctcacgcc |
149356 |
T |
|
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