View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7506_low_12 (Length: 418)
Name: NF7506_low_12
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 42 - 390
Target Start/End: Complemental strand, 31498273 - 31497921
Alignment:
| Q |
42 |
gatagatttaaaactcttaactctcctctgtctaagtcaagcaaaataatcatcgacaaattaattgaattgataatggtaattgctaaagaaaaattgg |
141 |
Q |
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| T |
31498273 |
gatagatttaaaactcttaactctcatctgtctaagtcaagcaaaataatcatcgacaaattaattgaattgataatggtaattgctaaagaaaaattgg |
31498174 |
T |
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| Q |
142 |
ccaacagagataaatttaatgggcgacgatcattgtcttttttcaaaaaattatgttaaatannnnnnnctttaggtatgacggttaagattttttcttt |
241 |
Q |
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| T |
31498173 |
ccaacagagataaatttaatgggcgacgatctttgtcttttttcaaaaaattatgttaaatattttattctttaggtatgacggttaagattttttcttt |
31498074 |
T |
|
| Q |
242 |
aaatttgtttgaactttaaaaa----cgttattccacaaaaagataaagctcaatcaggattgagtctactagaaaaggctagagtcttatagcgtcgca |
337 |
Q |
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| T |
31498073 |
aaatttgtttgaactttaaaaacgttcgttattccacaaaaagataaagctcaatcaggattcagtctactagaaaaggctagagtcttatagggtcgca |
31497974 |
T |
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| Q |
338 |
aatgaggaacctatatttagtatctgatagtatctcgaatataattatctatt |
390 |
Q |
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| T |
31497973 |
aatgaggaacctatatttagtatctgatagtatctcgaatataattatctatt |
31497921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31498434 - 31498397
Alignment:
| Q |
1 |
ctacattcatcaatattattattctttccttccctttt |
38 |
Q |
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| T |
31498434 |
ctacattcatcaatattattattttttccttccctttt |
31498397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 5587578 - 5587639
Alignment:
| Q |
42 |
gatagatttaaaactcttaactctcctctgtctaagtcaagcaaaataatcatcgacaaatt |
103 |
Q |
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||||||| | ||||||||||||||| ||||| |||||| |||||||||||| |||||||||| |
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| T |
5587578 |
gatagatgtgaaactcttaactctcatctgtgtaagtctagcaaaataatcttcgacaaatt |
5587639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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