View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7506_low_13 (Length: 413)
Name: NF7506_low_13
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 123 - 402
Target Start/End: Complemental strand, 48904531 - 48904249
Alignment:
| Q |
123 |
tggtcataacactctttatgtattaaataagggatttctgattaccgttggtgctgctgatttatttccaatttatttgtggtaaaccttttttcccatc |
222 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48904531 |
tggtcataacactatttatgtattaaataagggatttctgattaccgttggtgctgctgatttatttccaatttatttgtggtaaaccttttttcccatc |
48904432 |
T |
|
| Q |
223 |
accagattttattccattgagtttccttgctaagatttttaaggagctaaatggtgtttatgtcaggggacaatctacaatcttaagaagatgacacaaa |
322 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48904431 |
accagattttattccattgagttttcttgctaagatttttaaggagctaaatggtgtttatgtcaggggacaatctacaatcttaagaagatgacacaaa |
48904332 |
T |
|
| Q |
323 |
caaaaatgtt---agagttaatataagtaaacattttgttctaagcaagaatcatgtcttgtttgattccttaagctattcat |
402 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48904331 |
caaaaatgttaaaagagttaatataagtaaacattttgttctaagcaagaatcatgtcttgtttgattccttaagctattcat |
48904249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 48904634 - 48904565
Alignment:
| Q |
20 |
tgaagttcatgtgattttcaccacttacaatcatttcaaaatctgagatttacatgagtttctcccaata |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48904634 |
tgaagttcatgtgattttcaccacttacaatcatttcaaaatctgagatttacatgagtttctcccaata |
48904565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University