View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7506_low_16 (Length: 381)
Name: NF7506_low_16
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_low_16 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 188972 - 188815
Alignment:
| Q |
21 |
atcattataatccaacacaattgttaagcagtggatggataagaaggaaagatccacatacattacattctataaataaatagtttcaatgtttcaatct |
120 |
Q |
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| T |
188972 |
atcattataatccaacacaattgttaagcagtggatggataagaaggaaagatccacatacattacattctataaataaatagtttcaatgtttcaatct |
188873 |
T |
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| Q |
121 |
tctcctttgattgctaatgtaatgtagtctcttaacttctttatatatataactaaac |
178 |
Q |
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| T |
188872 |
tctcctttgattgctaatgtaatgtagtctcttaacttctttatatatataactaaac |
188815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 212 - 370
Target Start/End: Complemental strand, 188771 - 188613
Alignment:
| Q |
212 |
cctataattttgctagaggaaaaatgggtgttgaagcaaacgtggatggtccatccaaatatccaggaaaactcacctttagggtgattatcacttgtat |
311 |
Q |
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| T |
188771 |
cctataattttgctagaggaaaaatgggtgttgaagcaaacgtggatggtccatccaaatatccaggaaaactcacctttagggtgattatcacttgtat |
188672 |
T |
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| Q |
312 |
catggctgccactggtggattaatctttggttatgatcatggtgtttcaggtcattcat |
370 |
Q |
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| T |
188671 |
catggctgccactggtggattaatctttggttatgatcatggtgtttcaggtaattcat |
188613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 359
Target Start/End: Complemental strand, 7124060 - 7123970
Alignment:
| Q |
269 |
aatatccaggaaaactcacctttagggtgattatcacttgtatcatggctgccactggtggattaatctttggttatgatcatggtgtttc |
359 |
Q |
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| T |
7124060 |
aatatcctggaaaactcacctttagggttattatcacttgtgtcatggcagcaagtggtggattaatttatggatatgatcacggtgtttc |
7123970 |
T |
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