View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7506_low_18 (Length: 341)
Name: NF7506_low_18
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_low_18 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 23119489 - 23119812
Alignment:
| Q |
15 |
tatggagagaccaaaagatgaacgactaattgatgatttacttgaatattttaatgggagtgatggtggtaatctaccatatttctagcttattgtcgga |
114 |
Q |
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| T |
23119489 |
tatggagagaccaaaagatgaacgaccaattgatgatttacttgaatattttaatgggagtgatggtggtaatctaccatatttctagcttattgtcgga |
23119588 |
T |
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| Q |
115 |
aaatattgtcatctcttatgcactaaccattctcctttatatcattatttttatcttttattcaataataaaatatcgtgttgtaatctctccttgagaa |
214 |
Q |
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| T |
23119589 |
aaatattgtcatctcttatgcactaaccattctcctttatatcattatttttattttttattcaataat---atatcatgttgtaatgtctccttgagaa |
23119685 |
T |
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| Q |
215 |
tttaataagtttaacacacaatttcttattctgtttttagctctgtataacttgccttaaagtttcatatgatttgaccgatataaaagaaacttcgaca |
314 |
Q |
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| T |
23119686 |
tttaattagtttaacacacaatcccttattctgtttttagctctgtataacttgccttaaagtttcatatgatttgaccgatataaaagaaacttcgaca |
23119785 |
T |
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| Q |
315 |
aataagaagaaaaagaagaataggaga |
341 |
Q |
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| T |
23119786 |
aataagaagaaaaaggagaataggaga |
23119812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 23104043 - 23104332
Alignment:
| Q |
42 |
aattgatgatttacttgaatattttaatgggagtgatggtggtaatctaccatattt-ctagcttattgtcggaaaatattgtcatctcttatgcactaa |
140 |
Q |
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| T |
23104043 |
aattgatgatttacttgaatattttaatgggaatgatggtggtaatgtaccatattttctaccttattgtcgaaaaataatgtcat-------gcactaa |
23104135 |
T |
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| Q |
141 |
ccattctcctttatatcattatttttatcttttattcaataataaaatatcgtgttgtaatctctccttgagaatttaataagtttaacacacaatttct |
240 |
Q |
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| T |
23104136 |
ccattctc-tttatagcattatttttattttttattcaataata---tataatgttgtaatgtctccttgagagtttaataagtttaacacacaatccct |
23104231 |
T |
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| Q |
241 |
tattctgtttttagctctgtataacttgccttaaagtttcatatgatttgaccgatataaaagaaacttcgacaaataagaagaaaaagaagaataggag |
340 |
Q |
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| T |
23104232 |
tattttgtttttagctctgtataacgtgccttaaatattcatatgatttgacagatataaaagaaacttcaacagataagaagaaaaggaagaataggag |
23104331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 23100784 - 23100817
Alignment:
| Q |
42 |
aattgatgatttacttgaatattttaatgggagt |
75 |
Q |
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| T |
23100784 |
aattgatgatttacttgaatattttaatgggagt |
23100817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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