View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7506_low_24 (Length: 255)
Name: NF7506_low_24
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 404914 - 404788
Alignment:
| Q |
1 |
ttagctcagtgacaatagcacaacatgctcatattggtgctaattgaaaaagaatgaaaagttatcaaataggacatgtattaaaaactcatatccgtgc |
100 |
Q |
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| T |
404914 |
ttagctcagtgacaatagcacaacatgctcatattggtgctaattgaaaaagaatgaaaagttatcaaataggacatgtattaaaaactcatatccgtgc |
404815 |
T |
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| Q |
101 |
aaatattacaaacattctatttgtgat |
127 |
Q |
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| T |
404814 |
aaatattacaaacattctatttgtgat |
404788 |
T |
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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 972923 - 973049
Alignment:
| Q |
5 |
ctcagtgacaatagcacaacatgctcatattggtgctaa----ttgaaaaagaatgaaaagttatcaaataggacatgtattaaaaactcatatccgtgc |
100 |
Q |
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| T |
972923 |
ctcagtgataacaacacaacatgctcgtattggtcctaactaattaaaagataatgaaaagttctcaaataagacatgttttcaaaactcatataggtgc |
973022 |
T |
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| Q |
101 |
aaatattacaaacattctatttgtgat |
127 |
Q |
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| T |
973023 |
taatattacaaactttctgtttgtgat |
973049 |
T |
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