View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7506_low_25 (Length: 252)

Name: NF7506_low_25
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7506_low_25
NF7506_low_25
[»] chr7 (6 HSPs)
chr7 (2-226)||(26979238-26979461)
chr7 (25-107)||(35153514-35153596)
chr7 (22-123)||(3203762-3203863)
chr7 (22-61)||(31860908-31860947)
chr7 (22-69)||(35153219-35153266)
chr7 (1-70)||(35153580-35153649)
[»] chr4 (7 HSPs)
chr4 (22-102)||(43107963-43108043)
chr4 (41-132)||(3343512-3343603)
chr4 (23-69)||(3343871-3343917)
chr4 (33-124)||(3343726-3343817)
chr4 (23-69)||(39290286-39290332)
chr4 (25-69)||(3343425-3343469)
chr4 (33-69)||(39290068-39290104)
[»] chr5 (4 HSPs)
chr5 (25-69)||(18960678-18960722)
chr5 (35-120)||(12513020-12513105)
chr5 (22-69)||(10927938-10927985)
chr5 (3-68)||(10928029-10928094)
[»] chr2 (3 HSPs)
chr2 (23-69)||(35687455-35687501)
chr2 (12-132)||(11879922-11880043)
chr2 (11-63)||(11879901-11879953)
[»] chr1 (1 HSPs)
chr1 (22-70)||(20806967-20807015)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 26979461 - 26979238
Alignment:
Q  2 ccatgcagcaaaccaaataacatgactcataaggaatatatgcaacaagccaagtgtcaagaggaatatttacagtaaaccaagtattgcccatgtaata 101  Q
    ||||||||||||||||||| || ||||||||| ||||| |||||||||| |||| |||||||| |||| ||||||||||||||||||| ||||| |||||    
T  26979461 ccatgcagcaaaccaaatatcaggactcataaagaatacatgcaacaagtcaagcgtcaagagaaatacttacagtaaaccaagtattacccatataata 26979362  T
Q  102 aa-ccaaatatcacgactcatgaaaaatacatcattcgctgattaaatagaacacatatatcatttttatcctacacgtcggcttgtggagtaatattat 200  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||  ||||||||||||    
T  26979361 aaaccaaatatcacgactcatgaaaaatacatcattcgccgattaaataaaacacatatatcatttttatcctacacggcggcttgcagagtaatattat 26979262  T
Q  201 ctggggtactgattaacatttctcta 226  Q
    ||  ||||||||||||||||||||||    
T  26979261 ct--ggtactgattaacatttctcta 26979238  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 35153514 - 35153596
Alignment:
Q  25 gactcataaggaatatatgcaacaagccaagtgtcaagaggaatatttacagtaaaccaagtattgcccatgtaataaaccaa 107  Q
    ||||||| || |||| ||||||||| |||||||||||||||||||  | ||| || ||||||||| |||||| ||||||||||    
T  35153514 gactcatgagcaatacatgcaacaaaccaagtgtcaagaggaatacatccaggaagccaagtattacccatgcaataaaccaa 35153596  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 3203863 - 3203762
Alignment:
Q  22 catgactcataaggaatatatgcaacaagccaagtgtcaagaggaatatttacagtaaaccaagtattgcccatgtaataaaccaaatatcacgactcat 121  Q
    |||||||||| ||||||| || ||||||||||||||||||||| ||||  | ||| || |||| | || ||||||| ||||| ||| | ||| |||||||    
T  3203863 catgactcatgaggaatacatccaacaagccaagtgtcaagagaaatacatgcagaaagccaaatgttacccatgtcataaaacaagtgtcatgactcat 3203764  T
Q  122 ga 123  Q
    ||    
T  3203763 ga 3203762  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 31860908 - 31860947
Alignment:
Q  22 catgactcataaggaatatatgcaacaagccaagtgtcaa 61  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  31860908 catgactcataaggaatacatgcaacaagccaaatgtcaa 31860947  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 35153219 - 35153266
Alignment:
Q  22 catgactcataaggaatatatgcaacaagccaagtgtcaagaggaata 69  Q
    |||||||||| | ||||| |||||||||| ||||||||||||||||||    
T  35153219 catgactcatgaagaatacatgcaacaagacaagtgtcaagaggaata 35153266  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35153580 - 35153649
Alignment:
Q  1 cccatgcagcaaaccaaataacatgactcataaggaatatatgcaacaagccaagtgtcaagaggaatat 70  Q
    ||||||||  ||||||| |  ||||| |||||||||||| ||||||| || ||||||||||||| |||||    
T  35153580 cccatgcaataaaccaagtgtcatgattcataaggaatacatgcaaccagtcaagtgtcaagagaaatat 35153649  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 43107963 - 43108043
Alignment:
Q  22 catgactcataaggaatatatgcaacaagccaagtgtcaagaggaatatttacagtaaaccaagtattgcccatgtaataa 102  Q
    |||||||||| ||||||| |||||||||||||| |||||||||||||| ||||| |||  ||||| || |||||| |||||    
T  43107963 catgactcatgaggaatacatgcaacaagccaaatgtcaagaggaatacttacaataagtcaagtgttacccatgcaataa 43108043  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 3343603 - 3343512
Alignment:
Q  41 atgcaacaagccaagtgtcaagaggaatatttacagtaaaccaagtattgcccatgtaataaaccaaatatcacgactcatgaaaaatacat 132  Q
    |||||| ||||||||||||||||||||||  | ||| || |||| | || |||||| |||||||||| | |||||||||||||  |||||||    
T  3343603 atgcaataagccaagtgtcaagaggaatacatgcagcaagccaaatgttacccatgcaataaaccaagtgtcacgactcatgaggaatacat 3343512  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 3343917 - 3343871
Alignment:
Q  23 atgactcataaggaatatatgcaacaagccaagtgtcaagaggaata 69  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  3343917 atgactcattaggaatacatgcaacaagccaaatgtcaagaggaata 3343871  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 3343817 - 3343726
Alignment:
Q  33 aggaatatatgcaacaagccaagtgtcaagaggaatatttacagtaaaccaagtattgcccatgtaataaaccaaatatcacgactcatgaa 124  Q
    ||||||| ||||||||| ||||||||||||| |||||  | ||| ||  ||||| || |||||| |||||||||||| ||| |||| |||||    
T  3343817 aggaatacatgcaacaaaccaagtgtcaagatgaatacatgcagcaagtcaagtgttacccatgcaataaaccaaatgtcatgactaatgaa 3343726  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 39290286 - 39290332
Alignment:
Q  23 atgactcataaggaatatatgcaacaagccaagtgtcaagaggaata 69  Q
    |||||||||||| |||| ||||||||||||| ||||||| |||||||    
T  39290286 atgactcataagaaatacatgcaacaagccatgtgtcaaaaggaata 39290332  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 3343469 - 3343425
Alignment:
Q  25 gactcataaggaatatatgcaacaagccaagtgtcaagaggaata 69  Q
    ||||||| | ||||| |||||||||||||| ||||||||||||||    
T  3343469 gactcatgatgaatacatgcaacaagccaaatgtcaagaggaata 3343425  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 39290068 - 39290104
Alignment:
Q  33 aggaatatatgcaacaagccaagtgtcaagaggaata 69  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  39290068 aggaatacatgcaacaagccaagtgtcaagagaaata 39290104  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 18960678 - 18960722
Alignment:
Q  25 gactcataaggaatatatgcaacaagccaagtgtcaagaggaata 69  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||    
T  18960678 gactcatgaggaatacatgcaacaagccaagtgtcaagaggaata 18960722  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 12513105 - 12513020
Alignment:
Q  35 gaatatatgcaacaagccaagtgtcaagaggaatatttacagtaaaccaagtattgcccatgtaataaaccaaatatcacgactca 120  Q
    ||||| ||||||||| |||||||||||||||||||  | ||| |||||||  ||| |||||| |||||| ||||| |||| |||||    
T  12513105 gaatacatgcaacaatccaagtgtcaagaggaatacatgcagcaaaccaatcattacccatgcaataaatcaaatgtcacaactca 12513020  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 10927985 - 10927938
Alignment:
Q  22 catgactcataaggaatatatgcaacaagccaagtgtcaagaggaata 69  Q
    |||||||||| |||||||||||||||||  |||||||||||| |||||    
T  10927985 catgactcatgaggaatatatgcaacaaatcaagtgtcaagaagaata 10927938  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 10928094 - 10928029
Alignment:
Q  3 catgcagcaaaccaaataacatgactcataaggaatatatgcaacaagccaagtgtcaagaggaat 68  Q
    |||||| |||||||| |  |||||||||  || |||| |||||| |||||||||||||||||||||    
T  10928094 catgcaacaaaccaagtgtcatgactcaggagaaatacatgcaataagccaagtgtcaagaggaat 10928029  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 35687455 - 35687501
Alignment:
Q  23 atgactcataaggaatatatgcaacaagccaagtgtcaagaggaata 69  Q
    ||||||||||||||||| |||||||||| |||||||||||| |||||    
T  35687455 atgactcataaggaatacatgcaacaagacaagtgtcaagaagaata 35687501  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 11880043 - 11879922
Alignment:
Q  12 aaccaaataacatgactcataaggaatatatgcaa-caagccaagtgtcaagaggaatatttacagtaaaccaagtattgcccatgtaataaaccaaata 110  Q
    |||||| | ||||||||||| ||||||| || ||| |||| ||||||||||||||||||  | ||  || |||||| || |||| | ||||||||||||     
T  11880043 aaccaagtgacatgactcatgaggaatacatacaaacaagtcaagtgtcaagaggaatacatgcatcaagccaagtgttacccaggaaataaaccaaatg 11879944  T
Q  111 tcacgactcatgaaaaatacat 132  Q
    ||| || ||||||  |||||||    
T  11879943 tcatgattcatgaggaatacat 11879922  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 11879953 - 11879901
Alignment:
Q  11 aaaccaaataacatgactcataaggaatatatgcaacaagccaagtgtcaaga 63  Q
    |||||||||  ||||| |||| ||||||| |||||||||||||||| ||||||    
T  11879953 aaaccaaatgtcatgattcatgaggaatacatgcaacaagccaagtatcaaga 11879901  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 20806967 - 20807015
Alignment:
Q  22 catgactcataaggaatatatgcaacaagccaagtgtcaagaggaatat 70  Q
    |||||||||| ||||||| ||||||||| |||| |||||||||||||||    
T  20806967 catgactcatgaggaatacatgcaacaaaccaaatgtcaagaggaatat 20807015  T

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