View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7506_low_29 (Length: 226)

Name: NF7506_low_29
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7506_low_29
NF7506_low_29
[»] chr5 (6 HSPs)
chr5 (1-205)||(15531548-15531751)
chr5 (57-166)||(15531477-15531585)
chr5 (108-166)||(21256611-21256669)
chr5 (167-207)||(15531655-15531695)
chr5 (107-162)||(31339232-31339287)
chr5 (9-65)||(15513512-15513568)
[»] chr7 (2 HSPs)
chr7 (99-162)||(25432048-25432111)
chr7 (108-166)||(41830191-41830249)
[»] chr1 (4 HSPs)
chr1 (99-166)||(50038544-50038611)
chr1 (107-161)||(26231213-26231267)
chr1 (108-166)||(18705797-18705855)
chr1 (107-163)||(26231420-26231474)
[»] chr3 (1 HSPs)
chr3 (99-162)||(10744743-10744806)
[»] chr2 (2 HSPs)
chr2 (108-162)||(36402777-36402831)
chr2 (108-158)||(31269560-31269610)
[»] scaffold0525 (1 HSPs)
scaffold0525 (99-166)||(2117-2184)
[»] scaffold0251 (1 HSPs)
scaffold0251 (108-166)||(4606-4664)
[»] scaffold0023 (1 HSPs)
scaffold0023 (108-166)||(111633-111691)
[»] chr6 (1 HSPs)
chr6 (108-158)||(30689731-30689781)
[»] chr4 (1 HSPs)
chr4 (108-166)||(2547011-2547069)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 15531751 - 15531548
Alignment:
Q  1 tgaaaaaggattatataggttcggtcggttgatactttcttatggaataaacaaacaaaagagaactaataaggattatgtgttatcggatatatcttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| ||||    
T  15531751 tgaaaaaggattatataggttcggtcggttgatactttcttatggaataaacaaacaaaagagaactaataaggattatatgttatcagagatattttat 15531652  T
Q  101 taatggtatattagtcataatagatagtaatataaatagtttgtaaccaccccattagtgggaactaaaagagaactaataaagattatatgttattaga 200  Q
    |||||||||||||||| |||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||    
T  15531651 taatggtatattagtcctaatagatagtactataaatagcttgtaaccacccaattagtgggaactaaaagagaactaataaggattatatgtta-taga 15531553  T
Q  201 gatat 205  Q
    |||||    
T  15531552 gatat 15531548  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 15531585 - 15531477
Alignment:
Q  57 aaaagagaactaataaggattatgtgttatcggatatatcttattaatggtatattagtcataatagatagtaatataaatagtttgtaaccaccccatt 156  Q
    ||||||||||||||||||||||| |||||| | | |||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  15531585 aaaagagaactaataaggattatatgttatag-agatatctaattaatggtatattagtcctaatagatagtactataaatagtttgtaaccaccccatt 15531487  T
Q  157 agtgggaact 166  Q
    ||||||||||    
T  15531486 agtgggaact 15531477  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 21256611 - 21256669
Alignment:
Q  108 atattagtcataatagatagtaatataaatagtttgtaaccaccccattagtgggaact 166  Q
    |||||||||||| |||| |||| ||||||||  |||||||||||||||||| |||||||    
T  21256611 atattagtcatagtagagagtagtataaataacttgtaaccaccccattagagggaact 21256669  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 15531695 - 15531655
Alignment:
Q  167 aaaagagaactaataaagattatatgttattagagatattt 207  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  15531695 aaaagagaactaataaggattatatgttatcagagatattt 15531655  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 31339287 - 31339232
Alignment:
Q  107 tatattagtcataatagatagtaatataaatagtttgtaaccaccccattagtggg 162  Q
    |||||||||| || |||| |||| ||||||||  ||||||||||||||||||||||    
T  31339287 tatattagtcctagtagagagtagtataaataacttgtaaccaccccattagtggg 31339232  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 15513568 - 15513512
Alignment:
Q  9 gattatataggttcggtcggttgatactttcttatggaataaacaaacaaaagagaa 65  Q
    ||||||||||||||||    ||||| ||||||||| |||||||||||||| ||||||    
T  15513568 gattatataggttcggctaattgattctttcttatagaataaacaaacaagagagaa 15513512  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 25432048 - 25432111
Alignment:
Q  99 attaatggtatattagtcataatagatagtaatataaatagtttgtaaccaccccattagtggg 162  Q
    |||| ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||    
T  25432048 attagtggtatattagtcctaatagatagtactataaatagcttgtaaccaccccattagtggg 25432111  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 41830191 - 41830249
Alignment:
Q  108 atattagtcataatagatagtaatataaatagtttgtaaccaccccattagtgggaact 166  Q
    ||||||||| || |||| |||| ||||||||  |||||||||||||||||| |||||||    
T  41830191 atattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaact 41830249  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 50038544 - 50038611
Alignment:
Q  99 attaatggtatattagtcataatagatagtaatataaatagtttgtaaccaccccattagtgggaact 166  Q
    |||| ||||||||||||| ||||||||||||  | |||||| ||||||| ||||||||||||||||||    
T  50038544 attagtggtatattagtcctaatagatagtaccaaaaatagcttgtaactaccccattagtgggaact 50038611  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 26231267 - 26231213
Alignment:
Q  107 tatattagtcataatagatagtaatataaatag-tttgtaaccaccccattagtgg 161  Q
    |||||||||| ||||||||| || ||||||||| ||||||||||||||||||||||    
T  26231267 tatattagtcttaatagata-tagtataaatagctttgtaaccaccccattagtgg 26231213  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 18705855 - 18705797
Alignment:
Q  108 atattagtcataatagatagtaatataaatagtttgtaaccaccccattagtgggaact 166  Q
    ||||||||| || |||| |||| ||||||||  |||||||||||||||||| |||||||    
T  18705855 atattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaact 18705797  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 26231474 - 26231420
Alignment:
Q  107 tatattagtcataatagatagtaatataaatagtttgtaaccaccccattagtggga 163  Q
    |||||||||| ||||||||| || ||||||||| ||||||||| |||||||||||||    
T  26231474 tatattagtcttaatagata-tagtataaatagcttgtaacca-cccattagtggga 26231420  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 10744743 - 10744806
Alignment:
Q  99 attaatggtatattagtcataatagatagtaatataaatagtttgtaaccaccccattagtggg 162  Q
    |||| ||||||||||||| ||||| |||||| ||||||||| ||| ||||||| ||||||||||    
T  10744743 attagtggtatattagtcttaatatatagtagtataaatagcttgaaaccacctcattagtggg 10744806  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 36402831 - 36402777
Alignment:
Q  108 atattagtcataatagatagtaatataaatagtttgtaaccaccccattagtggg 162  Q
    ||||||||| || |||||  || ||||||||||||||||||||||||||||||||    
T  36402831 atattagtcttagtagattttagtataaatagtttgtaaccaccccattagtggg 36402777  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 31269610 - 31269560
Alignment:
Q  108 atattagtcataatagatagtaatataaatagtttgtaaccaccccattag 158  Q
    ||||||||| || |||| |||||||||||||  ||||||||||||||||||    
T  31269610 atattagtcctagtagagagtaatataaataacttgtaaccaccccattag 31269560  T

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Target: scaffold0525 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 2184 - 2117
Alignment:
Q  99 attaatggtatattagtcataatagatagtaatataaatagtttgtaaccaccccattagtgggaact 166  Q
    |||||| | ||||||||| || |||| |||| ||||||||  |||||||||||||||||| |||||||    
T  2184 attaatagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaact 2117  T

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Target: scaffold0251 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 4606 - 4664
Alignment:
Q  108 atattagtcataatagatagtaatataaatagtttgtaaccaccccattagtgggaact 166  Q
    ||||||||| || |||| |||| |||||||| ||||||||||||| ||||| |||||||    
T  4606 atattagtcctagtagagagtagtataaataatttgtaaccaccctattagagggaact 4664  T

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Target: scaffold0023 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 111691 - 111633
Alignment:
Q  108 atattagtcataatagatagtaatataaatagtttgtaaccaccccattagtgggaact 166  Q
    ||||||||| || |||| |||| ||||||||  |||||||||||||||||| |||||||    
T  111691 atattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaact 111633  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 30689781 - 30689731
Alignment:
Q  108 atattagtcataatagatagtaatataaatagtttgtaaccaccccattag 158  Q
    ||||||||| || |||| |||| |||||||| |||||||||||||||||||    
T  30689781 atattagtcctagtagagagtagtataaataatttgtaaccaccccattag 30689731  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 2547011 - 2547069
Alignment:
Q  108 atattagtcataatagatagtaatataaatagtttgtaaccaccccattagtgggaact 166  Q
    ||||||||| || |||| |||| ||||||||  |||||||||||||||||| |||||||    
T  2547011 atattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaact 2547069  T

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