View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7506_low_3 (Length: 620)
Name: NF7506_low_3
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 45934506 - 45934199
Alignment:
| Q |
18 |
aaaccacattgagattgtgataaggaaattaagagtcgagcttcgatatgattcgccatagacttcataaacgactaacagtataagtatctcgaggccc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45934506 |
aaaccacattgagattgtgataaggaaattaagagtcgagcttcgatatgattcaccatagacttcataaacgaccaacagtataagtatctcgaggccc |
45934407 |
T |
|
| Q |
118 |
ttcacaaagtgacttcgcgagtacattctgtaattatcagcaaactttgcgtggaagatgacgaaaccacgaccagttggtctatatttcgagcctccat |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45934406 |
ttcacaaagtgacttcacgagtacattctgtaattatcagcaaactttgcgtggaagatgacgaaaccacgatcagttggtctatatttcgagcctccat |
45934307 |
T |
|
| Q |
218 |
gcaagagcgttcttccataataatgagctttcgttccaagctgaaaagtaaagaacacagaggctaaatgcagttgcatgataatgaaatcacccaatgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45934306 |
gcaagagcgttcttccataataatgagctttcgttccaagctgaaaagtaaagaacacagaggctaaatgcagttgcatgataatgaaatcacccaaggc |
45934207 |
T |
|
| Q |
318 |
agtccgaa |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
45934206 |
agtccgaa |
45934199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 332 - 612
Target Start/End: Complemental strand, 45928708 - 45928428
Alignment:
| Q |
332 |
ttggggcagtgctgatgcataatagacagcatattgcatattacagctaggccttatccgaagtaaatttggtgagagaggtgtaagaggatcatcttag |
431 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45928708 |
ttggggcggtgctgatgcataatagacagcctattgcatattacagctaggccttatccgaagtaaatttggtgagagaggtgtaagaggatcatcttag |
45928609 |
T |
|
| Q |
432 |
aattaatggctaggctagtagtatccttctactagatttggttttttctttctattatggtgtaacttcctccatttgtattctaataaagttccatcta |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45928608 |
aattaatggctaggctagtagtatccttctactagatttggttttttctttctattatggtgtaacttcctccatttgtattctaataaagttccatcta |
45928509 |
T |
|
| Q |
532 |
gttgattcacattctcctctgatataattattggagtactgtaagctttgtattgacattgtaagcatttgtcatattctt |
612 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45928508 |
gttgattctcattctcctctgatataattattggagtactgtaagctttgtattgacattgtaagcatttgtcataatctt |
45928428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 15816740 - 15816433
Alignment:
| Q |
18 |
aaaccacattgagattgtgataaggaaattaagagtcgagcttcgatatgattcgccatagacttcataaacgactaacagtataagtatctcgaggccc |
117 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||| |||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
15816740 |
aaaccacattgagattgtgatgaagaaataaagagttgagcttcggtatgattcgccatagacttcataaatgatcaacagtataagtatctcgaggccc |
15816641 |
T |
|
| Q |
118 |
ttcacaaagtgacttcgcgagtacattctgtaattatcagcaaactttgcgtggaagatgacgaaaccacgaccagttggtctatatttcgagcctccat |
217 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
15816640 |
ttcacaaagtgacttctggagtacatcctgtaattatcagcaaactttgcatggaagacaacgaaaccccgaccagttggtctatatttagagcctccat |
15816541 |
T |
|
| Q |
218 |
gcaagagcgttcttccataataatgagctttcgttccaagctgaaaagtaaagaacacagaggctaaatgcagttgcatgataatgaaatcacccaatgc |
317 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
15816540 |
gcaagagtgttcttccatagtaatgagctttcgttccaagctggaaagtaaagaacacagaggctaattgcagttgcatgataatgaaatcacccaaggc |
15816441 |
T |
|
| Q |
318 |
agtccgaa |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
15816440 |
agtccgaa |
15816433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 408235 - 408293
Alignment:
| Q |
115 |
cccttcacaaagtgacttcgcgagtacattctgtaattatcagcaaactttgcgtggaa |
173 |
Q |
| |
|
||||| ||||||||||||||||| || | ||| ||||||||||||||||| || ||||| |
|
|
| T |
408235 |
cccttgacaaagtgacttcgcgaataaagtctataattatcagcaaacttggcatggaa |
408293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University