View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7506_low_31 (Length: 223)
Name: NF7506_low_31
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 51845912 - 51845720
Alignment:
| Q |
18 |
aaaagaaataaaatgtgacagcgttaccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatg |
117 |
Q |
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| T |
51845912 |
aaaagaaataaaatgtgacagcgttaccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatg |
51845813 |
T |
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| Q |
118 |
gtaagccaaaggagccaaaatattacggtttctaagcctcccaaaccgtctcatctcggcatcaaatatatctctgcttactttattcatctc |
210 |
Q |
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| T |
51845812 |
gtaagccaaaggagccaaaatattacggtttctaagcctcccaaaccgtctcatctcggcatcaaatatatctctgcttactttattcatctc |
51845720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 42 - 183
Target Start/End: Original strand, 18628238 - 18628379
Alignment:
| Q |
42 |
taccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatatt |
141 |
Q |
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|||| |||||||||||||||||||||||||||||| | || ||||||||||| | ||| ||||| | || ||||| ||||||||||||| ||||||||| |
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| T |
18628238 |
taccgtgcaagacatataacaagcttcctttaggcttatactcagtaacaaaaagcttttcctctcgacgataatgataagccaaaggagtcaaaatatt |
18628337 |
T |
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| Q |
142 |
acggtttctaagcctcccaaaccgtctcatctcggcatcaaa |
183 |
Q |
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| T |
18628338 |
agcatgtctaatcctcccaaactgtctcatctcagcatcaaa |
18628379 |
T |
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