View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7506_low_5 (Length: 525)
Name: NF7506_low_5
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7506_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 230 - 521
Target Start/End: Complemental strand, 41315200 - 41314909
Alignment:
| Q |
230 |
tagttgagaagaaaacaaagaacattttagaaaatcttgatctatcaaacttatggtcatcggataagaaaacaatagatgatcaaatgtcaccgcatca |
329 |
Q |
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| T |
41315200 |
tagttgagaagaaaacaaagaacattttagaaaatcttgatctatcaaacttatggtcatcggataagaaaacaatagatgatcaaatgtcaccgcatca |
41315101 |
T |
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| Q |
330 |
cctcaaaaatctccaccgtctccttttcaaaacagctgagtattctccccgtaacacgcttggcagtcattggagagaataccatggctgcaatgattgg |
429 |
Q |
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| T |
41315100 |
cctcaaaaatctccaccgtctccttttcaaaacagctgagtattctccccgtaacacgcttggcagtcattggagagaataccatggctgcaatgattgg |
41315001 |
T |
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| Q |
430 |
aaaggaatgttagatcctctcgacgagaatcttcgtcgagaggtagttcgttatggtgaatttgtacaagatgcgtatcattcttctcactc |
521 |
Q |
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| T |
41315000 |
aaaggaatgttagatcctctcgacgagaatcttcgtcgagaggtagttcgttatggtgaatttgtacaagacgcgtatcattcttttcactc |
41314909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 41315426 - 41315263
Alignment:
| Q |
19 |
atgatgatcaattcaactctaccatcacacaaccttaacatgttccaaactagacaacaatccaccttcacatgccgatcatcctcttccattaacaacc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41315426 |
atgatgatcaattcaactctaccatcacacaaccttaacatgttccaaactagacaacaatccaccttcacatgccgatcatcctcttccattaataacc |
41315327 |
T |
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| Q |
119 |
aactcccacctcgtaaaccactttcttccaccaagttacatctctctaatcttgataaatttct |
182 |
Q |
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| T |
41315326 |
aactcccacctcgtaaaccactttcttccaccaagttacatctctctaatcttgataaatttct |
41315263 |
T |
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