View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7506_low_6 (Length: 525)

Name: NF7506_low_6
Description: NF7506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7506_low_6
NF7506_low_6
[»] chr6 (3 HSPs)
chr6 (1-329)||(251199-251532)
chr6 (359-517)||(251561-251719)
chr6 (1-223)||(255541-255763)


Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 251199 - 251532
Alignment:
Q  1 ccacaaaaatatagtagatttgttatgaagaaagcaggcctaaatttgaaggcgtaaggttctgcaaaacgtattgatcgatatccaatatcatgatctt 100  Q
    ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251199 ccacaaaaatataatatatttggtatgaagaaagcaggcctaaatttgaaggcgtaaggttctgcaaaacgtattgatcgatatccaatatcatgatctt 251298  T
Q  101 tgtctttacagtgaactccgagctgttcaccagtggtgaagttgtttgtgatatacatgtgtactatgggcttaaggataccgaaactattaccaccctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251299 tgtctttacagtgaactccgagctgttcaccagtggtgaagttgtttgtgatatacatgtgtactatgggcttaaggataccgaaactattaccaccctt 251398  T
Q  201 caactggaaaacaacaagaatagttagtaaagcaaatttcgagagtgaaaccatcctatttgcacagatcgatattcaaacatatgacat-----gtttc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     |||||    
T  251399 caactggaaaacaacaagaatagttagtaaagcaaatttcgagagtgaaaccatcctatttgcacaaatcgatattcaaacatatgacatgtttcgtttc 251498  T
Q  296 aagttatatatatactgttgaacctaatcaaggg 329  Q
    |||||||||||||||||||||||||||| |||||    
T  251499 aagttatatatatactgttgaacctaatgaaggg 251532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 359 - 517
Target Start/End: Original strand, 251561 - 251719
Alignment:
Q  359 aatgcaaattaaaagtgatgctattttaatgtgatgtcataagttgacattctaactaagttggcaccaaaataaattaccattagcatctccaaaagtc 458  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  251561 aatgcaaattaaaagtgatgctattttaatgtgatgtcatacgttgacattctaactacgttggcactaaaataaattaccattagcatctccaaaagtc 251660  T
Q  459 ttattcatagtaaagaaaatacaaaataatggtattttattgacacatacatattcttc 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  251661 ttattcatagtaaagaaaatacaaaataatggtattttattgacacatacattttcttc 251719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 255541 - 255763
Alignment:
Q  1 ccacaaaaatatagtagatttgttatgaagaaagcaggcctaaatttgaaggcgtaaggttctgcaaaacgtattgatcgatatccaatatcatgatctt 100  Q
    |||||||||||||    ||||| |||||||||||||||||||||  |||| ||||||||||||  |||| |||||| |||||||||||||||||||||||    
T  255541 ccacaaaaatataaggtatttgatatgaagaaagcaggcctaaaagtgaaagcgtaaggttcttgaaaatgtattgctcgatatccaatatcatgatctt 255640  T
Q  101 tgtctttacagtgaactccgagctgttcaccagtggtgaagttgtttgtgatatacatgtgtactatgggcttaaggataccgaaactattaccaccctt 200  Q
    ||||||||||||| |||||||| ||||||||| |||| |||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  255641 tgtctttacagtggactccgagttgttcaccattggtcaagttgttggtaatatacatgtgtactacgggcttaaggatactgaaactattaccaccctt 255740  T
Q  201 caactggaaaacaacaagaatag 223  Q
    |||||| ||||||| || |||||    
T  255741 caactgaaaaacaaaaataatag 255763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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